Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1777 ATGGATGTTCCCTCCGCTATTGCTGCAAAAATAGCTGAGTTAACTGTGGTACCTATTGGAAGGCAAGTGGGATATTTAATATCTTACAAAGAAAACTTTAAGGAGCTAAAGGATAAGATGGAGGAGTTGAATGCAAGAAAAGTTCGCAATGAGCATAATGTTGAAGCAGCACGAAGGAATGGAAGGGAGATTGAAGCTGATGTAGTAAGTTGGCTAAGAAGAGTTTATGAGACCTTAGAAGAAGCAGAGAAGCTTTGTGAAGATCAAACCCATGCTAGTGTAACGTGTTGGAAATTGTCTCTTCCTAAGTTGAAAACAAGACATCAACTTGGTAGAAAAGCAAAGAAAATGGCAGTCATGGTTGCTGAGCTGAAGGAAAAGGGGAGGTTTGATGGTGGTTTTGGGCATGTTCCTTCTCCTAGCACAGTAAACTGGATTTTTTCTACTACAAGTAGTGAAAAGCTTGAGTCCAGAAACTCATTGAAGAAGGACATTATGTTGTCTCTGACCGACCCTAAAGTAAGCAAAGTTGGAATTTATGGGTTGCCTGGGGTGGGGAAGACCACTCTAGTTAAAGAGGTTGCCAAACATGTTAAGGATGAAAAGTTGTTTGATGAGGTGGCTATGACAACTATATCCCAAACAATGGATGTTAAAAGAGTTCAAGATGAGATTGCGAATTATTTAGGCCTCCACTTGGATGAGGTGACCTCAGTTGGAAGAGCCGACCGCCTGTGTGCAAGGATACAAAAGGAGAAGAATATCCTTATCATACTAGATGACTTGTGGGAGAAAATTGATTTGGACAAGTTGGGAATTCCTTTTGAGCAAGATGTTAAGGGTAACAGATTATCATTGACTAATAAACGTTTAGATATTTCACAAAAGAATGAGACTTATCAGGGTTGCAAATTATTGTTGACATCTAGACGTTTAGATATTTTACATAAGAATGAAAGTGAAAAGAACTTTGTTGTTAAACCCTTAGAAAATGTAGAAGCATGGAGTTTGTTTCAAGATACGGTAGGTGATGCTGTTAAAGATGCAAATTTGCAAGAGATAGCAAGCCAAGTTGTTGACAGATGTGCAGGATTGCCTATTGTGATAGTCCCGATTGCAAAGTCATTAAAATATAATAAGGATATTTATTACTGGAAAGACACCTTGAACAGATTAAAGAGAGTTGATGGTGGAGACCTGAGTGGGATTGTTTTTTCAGCTTTTGAATTTACTTACAATCAACTGGAAGATGATGAAACGAAGAAAGTATTCTTGCTTTGTGGTGTACATGGACCATCCATATTGGTTAGTGACTTGTTGAAACGTGTACTTGGTTTGGGTTTTCTTAAGCACATAGATACAGTGGAAGATGCAAGAAACCGGCTATATAGAATAATTGATTACTTGAAAGCATCTTATTTGTTACTTGATGATGATGAAAGTGATACTGATGCAATTAAAATGAATGGCCTTGTCTGTGAAGTAGCTGCCTCAATTGCTTATAAGAGTGAACACGTTTTGGCCTTGAAAAGAAATGATCGGATGCAAGATTGGCTAAGCAAGGGTTTCCTTGAAAGTTGTACTCAGATAACCTTAGAAGCATGTTTTATCCAAGAACTTCCTCAAAAGTTACACTGCCCCAGTTTGAAATTTTTCCTACTACGATGTGATGATGATAATTGTGTTGTGGAAATTCCAGACTTGTTTTTTGAGGGAATGGGAAGCCTTGAAACATTAGGTTTGAGAGGCTTGATAATATCTTCTTTGCCTAAATCTCTTTTTTCCTTGACCAAACTTAAAGCATTGGGTTTGGATTTTTGCATTTTAAAAAATATGGTTGGAATAGGTGCCTTGAAAAATTTAGAAATCCTTAGTTTTGTCGATTCATCCATAAAGGAGTTCCCAAGTGAAATTGGACAATTAACTCATTTGAGAATGTTGGATTTGAGTAATTCTGGGATTAAGATCATGCCACCTAACATTTTTTCCAAGTTGACCAAATTAGAGGAACTTTATCTGGGCAATGCCTCAATTAAGTGGGAGGAGGAAATTTCGATCAAGCAAAACAAAAGTGCCAGTCTTGCTGAACTTGGGTGTTTGGAAAGTCTGACTACTTTAGAAATTCAAGTTTGTGAGGCCTGA 2142 0.3763 MDVPSAIAAKIAELTVVPIGRQVGYLISYKENFKELKDKMEELNARKVRNEHNVEAARRNGREIEADVVSWLRRVYETLEEAEKLCEDQTHASVTCWKLSLPKLKTRHQLGRKAKKMAVMVAELKEKGRFDGGFGHVPSPSTVNWIFSTTSSEKLESRNSLKKDIMLSLTDPKVSKVGIYGLPGVGKTTLVKEVAKHVKDEKLFDEVAMTTISQTMDVKRVQDEIANYLGLHLDEVTSVGRADRLCARIQKEKNILIILDDLWEKIDLDKLGIPFEQDVKGNRLSLTNKRLDISQKNETYQGCKLLLTSRRLDILHKNESEKNFVVKPLENVEAWSLFQDTVGDAVKDANLQEIASQVVDRCAGLPIVIVPIAKSLKYNKDIYYWKDTLNRLKRVDGGDLSGIVFSAFEFTYNQLEDDETKKVFLLCGVHGPSILVSDLLKRVLGLGFLKHIDTVEDARNRLYRIIDYLKASYLLLDDDESDTDAIKMNGLVCEVAASIAYKSEHVLALKRNDRMQDWLSKGFLESCTQITLEACFIQELPQKLHCPSLKFFLLRCDDDNCVVEIPDLFFEGMGSLETLGLRGLIISSLPKSLFSLTKLKALGLDFCILKNMVGIGALKNLEILSFVDSSIKEFPSEIGQLTHLRMLDLSNSGIKIMPPNIFSKLTKLEELYLGNASIKWEEEISIKQNKSASLAELGCLESLTTLEIQVCEA 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1777 713 Pfam NB-ARC domain 169 296 IPR002182 GO:0043531
Mibi04g1777 713 Pfam NB-ARC domain 300 394 IPR002182 GO:0043531
Mibi04g1777 713 CDD AAA 179 262 - -
Mibi04g1777 713 Coils Coil 26 60 - -
Mibi04g1777 713 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 19 709 - -
Mibi04g1777 713 SMART LRR_typ_2 641 664 IPR003591 -
Mibi04g1777 713 SMART LRR_typ_2 573 596 IPR003591 -
Mibi04g1777 713 Gene3D - 148 326 IPR027417 -
Mibi04g1777 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 427 IPR027417 -
Mibi04g1777 713 SUPERFAMILY L domain-like 523 709 - -
Mibi04g1777 713 SMART AAA_5 173 330 IPR003593 -
Mibi04g1777 713 Gene3D - 329 416 IPR042197 -
Mibi04g1777 713 PRINTS Disease resistance protein signature 249 263 - -
Mibi04g1777 713 PRINTS Disease resistance protein signature 176 191 - -
Mibi04g1777 713 PRINTS Disease resistance protein signature 639 655 - -
Mibi04g1777 713 PRINTS Disease resistance protein signature 362 376 - -
Mibi04g1777 713 Pfam Leucine rich repeat 620 675 IPR001611 GO:0005515
Mibi04g1777 713 Gene3D Ribonuclease Inhibitor 494 713 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1777 Mibi-ChrMibi04 47174245 47176386 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1777 536 671 Trihelix Transcription Factor Family AT2G15880 32.624 8.00e-06 47.4