Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1728 ATGGTGGTTTCATTAACCCTTCACATTCCTCTCCTCTTATCTCTCCTTTTCCAATCTTCATCTTCATTATCATATAACACTCACTTCTCTCTATCAGTGGAGAAACCACAAGATGTTATTCTCTCACAAAATCTCATCTTCTCTGCTGGCTTCTTCGCCGTTGGAGATAACGCCTTTGTTTTTGCCGTCTGGTTCATCACTGAAAATCCTACCGTCGTTTGGATGGCGAACCGTGACCACCCCGTCAACGGAAAAGGGTCATCACTTACCCTCCGTAAAACCGGAAACCTCGTCCTCTTCGATGCCGGCCAGTACAAAGTGTGGTCAACTCATACCACTTCATCTTACCCAACACGATTGACTCTCAACAACAATGGAAACCTTGTACTCTATGAGCAACAATTACAAGGGAACATAATTTTATGGCAAAGCTTTGATTTCCCAGCACACACCCTACTTCCTGGGCAACAACTTACAAGATTTACAAACCTTGTTTCTTCTAGAAGCGAAACCAACCATTCATCTGGCTTCTACAAGCTTCTCTTTGATTGTGAAAACGTTCTTATTCTTATGTACGATGGTCCTGATGTGTCTAGCATATATTGGCCTTCCCCTTGGCTTAAGTGCTGGGACGCTGGAAGAAGGCCCTTCAATAGTAGCAGAATCGCAGTTTTAGATTCCCTCGGAGGTTTCAACTCATCAGATAAGTATCACTTTACAACTTCTGATTGTGGGATAGTGATACCAAGAAGATTGAAGTTAGATTCTGATGGTAATATTCGTGTGTATAGCTTGCACAATAATACATGGGAGGTGACGTGGCAAGCCATATCTGATGGTTGCATTGTGCATGGAATTGGTGGGGCTAATAGCACGTGTGAGTATGATCCTAGAGAAGGAAGAAGGAAGTGTTTGTGTCTCCCTGGATATAGAGTGAAGAACCATAGTGATTGGTCTTATGGGTGTGAACCCAAATTTCGATTCTCTTGGGATAAAAATGAGTTTAGTTTCTTGAAATTACCTAATGTTGAGATATATGGGAATGACTTGGTTTATCCGACAAGCATCACTTATGGTGAATGTGAGCGTAAATGCTTGGAAGAGTATGAGTGCAAGGCATTTCAGTACTCTCCTCGCTATGAAGGCTTTCTTTGCTTTACAAAAGGAGTTTTGATCAATGGTCATAAATCACCAAGTTTCACAGGAGCAACCTATGTGAAACTCCCAAAATCCCTAATAAGCAACAATAATGGTTCGTCCCATGAAGAAGAAGAAAATGATAATCTTTGCTCAGTGAAGCTCGAAAGAGTCTATACCATGAGACACGTCAGCAACTTTGTGAAGTTCTTTCTTTGGTTTACCGTTGCAATTGGAGTGATTGAAGTCCTCTTTATTTCTACAACGTGGTTTTCTTTGATGAGAACCAAACAACACTCTAATGTGAATCAGTTACAAGCAGGACACAATTTCATCTCTCCTTTTGGGTTGAAAAGGTTTACTTACTCTGAGATGAAACAAGCAACCAAAGGGTTCAAAGAAGAAATTGGAAGAGGCTCAGGTGGAAAAGTGTACAAAGGAGCATTGGCTGATCAAAGAATTGCAGCAATCAAGAAGCTGAATAATAACATGGTTGGAGCCAAACAAGAAGAAGGAGAATTCTTAGCTGAAGTGGATGTATATAGCTATGGTATTGTTGTGTTGGAGATCATAACAGGAAGGAGTCCAACAATGATGGGAATTCAGAGTGGGGAAGAAGGAACACAATGTGGGAGGCTTGTGACATGGGTGAGAGAGAAGAGGAAGAAAGCGACCTCGTGCTGTTGTTGGGTGGAGCAGATAATTGATTCTGCCATTGGATCAGAGTGTGAGGTTGAGAAGAGGAAGATGGAGACATTGGCTAAGGTAGCTTTGGAGTGTGTGGAAGAAGATAGGGAAGCTAGGTCCACTATGAGCCAAGTTGTCGAGATGCTTCAAAGTCATGATGCTAATTCTTCTTAG 1998 0.4179 MVVSLTLHIPLLLSLLFQSSSSLSYNTHFSLSVEKPQDVILSQNLIFSAGFFAVGDNAFVFAVWFITENPTVVWMANRDHPVNGKGSSLTLRKTGNLVLFDAGQYKVWSTHTTSSYPTRLTLNNNGNLVLYEQQLQGNIILWQSFDFPAHTLLPGQQLTRFTNLVSSRSETNHSSGFYKLLFDCENVLILMYDGPDVSSIYWPSPWLKCWDAGRRPFNSSRIAVLDSLGGFNSSDKYHFTTSDCGIVIPRRLKLDSDGNIRVYSLHNNTWEVTWQAISDGCIVHGIGGANSTCEYDPREGRRKCLCLPGYRVKNHSDWSYGCEPKFRFSWDKNEFSFLKLPNVEIYGNDLVYPTSITYGECERKCLEEYECKAFQYSPRYEGFLCFTKGVLINGHKSPSFTGATYVKLPKSLISNNNGSSHEEEENDNLCSVKLERVYTMRHVSNFVKFFLWFTVAIGVIEVLFISTTWFSLMRTKQHSNVNQLQAGHNFISPFGLKRFTYSEMKQATKGFKEEIGRGSGGKVYKGALADQRIAAIKKLNNNMVGAKQEEGEFLAEVDVYSYGIVVLEIITGRSPTMMGIQSGEEGTQCGRLVTWVREKRKKATSCCCWVEQIIDSAIGSECEVEKRKMETLAKVALECVEEDREARSTMSQVVEMLQSHDANSS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1728 665 Gene3D - 26 145 IPR036426 -
Mibi04g1728 665 Gene3D Transferase(Phosphotransferase) domain 1 473 665 - -
Mibi04g1728 665 SMART blect_4 31 148 IPR001480 -
Mibi04g1728 665 Pfam D-mannose binding lectin 71 160 IPR001480 -
Mibi04g1728 665 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 206 IPR036426 -
Mibi04g1728 665 ProSitePatterns Protein kinases ATP-binding region signature. 515 538 IPR017441 GO:0005524
Mibi04g1728 665 SUPERFAMILY Protein kinase-like (PK-like) 555 659 IPR011009 -
Mibi04g1728 665 SMART ntp_6 332 408 IPR003609 -
Mibi04g1728 665 ProSiteProfiles Bulb-type lectin domain profile. 25 143 IPR001480 -
Mibi04g1728 665 PANTHER OS07G0415500 PROTEIN 555 659 - -
Mibi04g1728 665 ProSiteProfiles PAN/Apple domain profile. 322 412 IPR003609 -
Mibi04g1728 665 SUPERFAMILY Hairpin loop containing domain-like 335 380 - -
Mibi04g1728 665 Pfam S-locus glycoprotein domain 248 313 IPR000858 GO:0048544
Mibi04g1728 665 CDD PAN_AP_plant 331 409 - -
Mibi04g1728 665 SUPERFAMILY Protein kinase-like (PK-like) 489 556 IPR011009 -
Mibi04g1728 665 CDD B_lectin 40 148 IPR001480 -
Mibi04g1728 665 Gene3D Phosphorylase Kinase; domain 1 495 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1728 Mibi-ChrMibi04 45586243 45588645 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1728 551 658 Receptor kinase-like Gene Family AT4G02010 35.185 2.28e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Mibi04g1728 S_locus_glycop 2.7e-05 No_clan