Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1727 ATGACCTTGCACAGGACGAAGAACACAAACGAAGATACAATTCTTGCCGACAATGGACAAGAAGAATTCTCTAATTCCTTCGTTTGCTGCGTTTGTGTGGATCTATTATACAAGCCTATTGTGTTATCTTGTGGTCACATGTTCTGTTTCTGGTGTGTCCATAAGTCAATGAGCCCTCTTTGTGAGTCTCATTGTCCAGATTGTGGGCATACGTATCACCACTTTCCAACAATCTGTTGGATGCTTCACTTCTTGCTTCTGAAGATGTATCCTGTTGCTTACAAGAGAAGGGAAATTCAAACTCTTGAGGAAGAAAACAAAGAGGCCTGCTACTCTCCTCAAATTGATCATGATAGTCTTGCATCAGAAGTCAAGTTTCATCATCCAGATACTTCATCGTCTGCCAGTATGGAGCAATCTGAGTCCGAAACTCAAAAGCAAGATAAGATGATTATCTGTTCTAAAGATATTTTTGGTGAAACTTCTGAAGCTTTTGGACAACAGAAGATATCAGTTGCAGATGTGATTTGTTCAGCATGCAAGCAACTTCTTTTTCATCCTGTTGTTCTTAACTGTGGTCATGTGTACTGCGAGTCTTGTATCAAGAACTCAGCTGATGACATGCTGAGATGCCAAATTTGTCAACTTCCACATCCTGAAGAATTTCCTAAAGTTTGTTTGGAGCTTGATCATTTTATAAAGGAACAATTTCCTGAGGAATATGCAAAGGAAAGAGATGCCGTTCATCTTATGCCCATCAATGATAAACCTGAGATCTCTGGCTCTCTGAATAAGGTTGGAGGCAAAGCAGCATGGCTCTCTGATCCTAACTCAAACGTACATGTTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCGATTGTTGGGGATAGATACAGATGCAAAGACTGTACGGAAAAGGTTGGTTTTGATCTTTGTGCAGATTGTTTTAAAATTCGCAGCAAGATTCCTGGGCGGTTCAATCAGCAGCACACTCCAGATCATGAGTTTGAGCTTAAACAAATCAACATTATCCACAACATAATGAGGTTGGTTACTGGACAGTTAGGAGAAGGTTCCATTGAAAATTTGCCTCTGGAACCTCAAGATCCCAATTTAGCTGGTGATGGAGAACATGCCACGAATGTCAATTGA 1155 0.4052 MTLHRTKNTNEDTILADNGQEEFSNSFVCCVCVDLLYKPIVLSCGHMFCFWCVHKSMSPLCESHCPDCGHTYHHFPTICWMLHFLLLKMYPVAYKRREIQTLEEENKEACYSPQIDHDSLASEVKFHHPDTSSSASMEQSESETQKQDKMIICSKDIFGETSEAFGQQKISVADVICSACKQLLFHPVVLNCGHVYCESCIKNSADDMLRCQICQLPHPEEFPKVCLELDHFIKEQFPEEYAKERDAVHLMPINDKPEISGSLNKVGGKAAWLSDPNSNVHVGVGCDFCGMFPIVGDRYRCKDCTEKVGFDLCADCFKIRSKIPGRFNQQHTPDHEFELKQINIIHNIMRLVTGQLGEGSIENLPLEPQDPNLAGDGEHATNVN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1727 384 FunFam E3 ubiquitin-protein ligase PRT1 275 340 - -
Mibi04g1727 384 SUPERFAMILY RING/U-box 174 237 - -
Mibi04g1727 384 FunFam E3 ubiquitin-protein ligase PRT1 165 259 - -
Mibi04g1727 384 ProSiteProfiles Zinc finger RING-type profile. 29 68 IPR001841 -
Mibi04g1727 384 CDD RING-HC 29 68 - -
Mibi04g1727 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 256 IPR013083 -
Mibi04g1727 384 Gene3D - 274 340 IPR043145 -
Mibi04g1727 384 ProSiteProfiles Zinc finger ZZ-type profile. 281 345 IPR000433 GO:0008270
Mibi04g1727 384 ProSitePatterns Zinc finger RING-type signature. 192 201 IPR017907 -
Mibi04g1727 384 Pfam Zinc finger, ZZ type 281 319 IPR000433 GO:0008270
Mibi04g1727 384 PANTHER UNCHARACTERIZED 20 341 - -
Mibi04g1727 384 Pfam RING-type zinc-finger 177 211 IPR027370 -
Mibi04g1727 384 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Mibi04g1727 384 MobiDBLite consensus disorder prediction 362 384 - -
Mibi04g1727 384 SUPERFAMILY RING/U-box 15 77 - -
Mibi04g1727 384 SMART ring_2 29 68 IPR001841 -
Mibi04g1727 384 SMART ring_2 177 214 IPR001841 -
Mibi04g1727 384 FunFam E3 ubiquitin-protein ligase PRT1 20 115 - -
Mibi04g1727 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 96 IPR013083 -
Mibi04g1727 384 SUPERFAMILY RING/U-box 273 338 - -
Mibi04g1727 384 ProSiteProfiles Zinc finger RING-type profile. 177 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1727 Mibi-ChrMibi04 45542794 45546023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1727 18 68 C3H Transcription Factor Family AT1G74990 42.308 4.16e-07 47.4