Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1726 ATGGCTTCGCAGGGAACGGAGAACGCAAACGGAGATACGAATATCACCGACAGTGAACAAGAAGAATTCTCCGATTCCTTTGTTTGTTGCGTTTGTTTGGATCTATTATACAAGCCCATTGTACTGTCTTGTGGTCACATATCGTGCTTCTGGTGTGTCCATCATTCAATGAGCCCCCTTTGTGAGTCTCATTGTCCAATATGTCGGAATTCATATTATCACTTTCCAACAATCTGTTGGATGCTTCACTTTTTGCTTCTGAAGATGTATCCTGTTGCTTACAAGAGAAGAGAAATTCAAACTCTTGAGGAAGAAAAGAAACAGGACTGCTACTCTCCTCAATTTGATGGTGATAATCCTGGTACTTCATCTTCCTGCTATTCTGGAAATCTGATTTCCAGCCCGCAGAATGCAGGACTTTCTGCAAGGAACAAGCAATCAGGATCTGAAACTCAAAAGCAACATAAGGTCACAAGCTGTTCTAAAGATGTTTGTGGGGGAACTCCTGAAGCTTTTGGGACTTCTGCTCAAGTAAAAATGATGCCTCAGAATTATAGGCGACAGATTATATCAGTTGCAGATGTAATGTGTTCATCATGCAAGCGACTTCTTTTTCGTCCTGTTGTTCTTAACTGTGGTCATGTATTCTGTGAGTCTTGTACCAAAAACTCAGATGATGAGATGCTTAGATGCCAAATTTGTCAACTTCCACATCCAAGGGGATTTCCGAAAGTTTGTTTGGAGCTTGATCACTTTATAAAGGAACAATTTCCTGAGGAATATGCAAAACAAAGAGATGCTGTTCAACTTAGGCATACCCACGATAAATCCGAGACCCCTTCTTGTTCTGGGAACAAGGGTGGAGGAGGAAAAACGGCATGGTTATCTGATCCTCACTCAAGTGTACATGTTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATTGTTGGGGATAGATACAGGTGCAAAGACTGTAAGGAGAGCGTTGGTTTCGATCTTTGCGCTGATTGTTATAAAATTCGCAGCAAGATTCCCGGGCGGTTCAATCAGCAGCACACTCCAGATCATGAGTTTGAGCTTAAACAAATTAACTTTATCCATAACATAATGCGGTTGGTTACTGGACAGTTAGGAGATGGTTCCATTGAAAATTCGCCTCTGGAAGGCATAGAGTTCAGATCCGAAGATCCCAATTTGGTTGTTGAGGGTGATGAAGAACATACCCAGGATGAATCTGAAGGCACCGATTGA 1254 0.4195 MASQGTENANGDTNITDSEQEEFSDSFVCCVCLDLLYKPIVLSCGHISCFWCVHHSMSPLCESHCPICRNSYYHFPTICWMLHFLLLKMYPVAYKRREIQTLEEEKKQDCYSPQFDGDNPGTSSSCYSGNLISSPQNAGLSARNKQSGSETQKQHKVTSCSKDVCGGTPEAFGTSAQVKMMPQNYRRQIISVADVMCSSCKRLLFRPVVLNCGHVFCESCTKNSDDEMLRCQICQLPHPRGFPKVCLELDHFIKEQFPEEYAKQRDAVQLRHTHDKSETPSCSGNKGGGGKTAWLSDPHSSVHVGVGCDFCGMFPIVGDRYRCKDCKESVGFDLCADCYKIRSKIPGRFNQQHTPDHEFELKQINFIHNIMRLVTGQLGDGSIENSPLEGIEFRSEDPNLVVEGDEEHTQDESEGTD 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1726 417 Pfam Zinc finger, ZZ type 303 341 IPR000433 GO:0008270
Mibi04g1726 417 SMART zz_5 302 348 IPR000433 GO:0008270
Mibi04g1726 417 FunFam E3 ubiquitin-protein ligase PRT1 20 115 - -
Mibi04g1726 417 Gene3D - 296 362 IPR043145 -
Mibi04g1726 417 SUPERFAMILY RING/U-box 295 360 - -
Mibi04g1726 417 ProSiteProfiles Zinc finger ZZ-type profile. 303 367 IPR000433 GO:0008270
Mibi04g1726 417 ProSiteProfiles Zinc finger RING-type profile. 29 69 IPR001841 -
Mibi04g1726 417 CDD RING-HC 29 68 - -
Mibi04g1726 417 Pfam RING-type zinc-finger 197 230 IPR027370 -
Mibi04g1726 417 MobiDBLite consensus disorder prediction 385 417 - -
Mibi04g1726 417 PANTHER UNCHARACTERIZED 17 363 - -
Mibi04g1726 417 SMART ring_2 197 234 IPR001841 -
Mibi04g1726 417 SMART ring_2 29 68 IPR001841 -
Mibi04g1726 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 127 IPR013083 -
Mibi04g1726 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 282 IPR013083 -
Mibi04g1726 417 SUPERFAMILY RING/U-box 179 238 - -
Mibi04g1726 417 FunFam E3 ubiquitin-protein ligase PRT1 297 362 - -
Mibi04g1726 417 FunFam E3 ubiquitin-protein ligase PRT1 184 279 - -
Mibi04g1726 417 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Mibi04g1726 417 SUPERFAMILY RING/U-box 20 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1726 Mibi-ChrMibi04 45518729 45525570 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1726 14 69 C3H Transcription Factor Family AT1G74990 37.705 2.82e-07 47.8