Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1657 ATGGCGAAGAAGCCAGGTCTGTTAGAATCCGATCCAACGGTCACAACAAAGGCAATGGAGCTCAAGAAGAAATTGCAGAAACTGGTCATGTCAATCGTTGAAGAAGACGAAGACGACGACGATCGTTACGCCGGCATTGAAACCATCGATACGACAATCGAGACTCTGTCGTTGCTTAAAGAACTCAAGCTAAGCGAGAAGTCGGCGACGGTGAAAACGACGTCGTCTTCGTCGCTTTCCTTGTCGTTTCGACATAAAACTGGTTTGAATTGTCCGGAGGAATTCAAATGCCCTATTTCTAAGCAATTGATGAGAGATCCTGTTATTGTGGCTTCTGGTCAGACATATGACAGAACGTTCATTCAAAAATGGCTGAAATCTGGGAACCGGACATGCCCTCAAACACGCCAAGTCCTCTCGCACAATATTCTCACTCCGAATTACCTAATAAGGGAAATGATTGAGCAATGGGGTAGAAGCCAAGGGATTGAATTCTCCAACCATGTTCACTACATCAATAGTGAGGAAGCTATGATAGAACCAGACCATGGTCATTTTCTTTCTTTGCTTGAGAAAGTGTCTTCATCATCACTTACGGAACAGAAAGCCGCTGCCAAGGAGCTCCGGATTCTGACAAAGAAAATGCCTTCTTTCCGGGTATTTTTCGGCGAATTTTCAGACGCCATTGCCAAATTGCTTAAACCAATCTGTGGGAGTCACTCTCTGGGTAATGTTCAACCTGACCTCCAAGAAGATGTTATCACAACACTCCTCAATATCTCCATCCAAGACAACAACAAGAAGCTTGTAGCAGAAACTCCCATGGTAATTCCTCTCCTCATGAGGGCATTGAGATCAGGAACAATAGCAACACGAAGCAACGCTGCCGCCGCCCTTTTCACTTTGTCGGCTTTGGACTCAAACAAGGAACTTATAGGGAAATCTGGAGCTTTGAAGCCTTTGATTAATCTTCTAGAAGAAGGGCATCCCTTAGCCATGAAAGATGTTGCATCAGCAATTTTCACCTTATGTGTCCTTCAAGAGAACAAGGCAAGAGCAGTGAAGGATGGCACTGTGAAGGTGATCGTGAACAAGATTGTCGACAGGGTTTATGTCGACGAACTACTAGCCATTCTCGCACTGCTCTCGAGTCACCAGAAGGCAATTCAAGACATGGGAGAGATTGGAGCTGTCCCTAGCCTGTTGAGCTTAATTAGAGAGACCACTTGTGAAAGAAACAAAGAGAATTGCATTGCAATTCTTCAAACTATCTGTCTGTATGACAAAACCAGGTTGAAGGAGATAAAGGAAGAAGAGAACAGACATAAAACAATCTCTGAGCTTGCACAAAATGGAACTTCAAGGGCAAAGAGGAAGGCTGCTGGAATTCTTGAGAGACTAAACAGGGTTGTTAATGTTGTACACACTGCATAA 1434 0.4421 MAKKPGLLESDPTVTTKAMELKKKLQKLVMSIVEEDEDDDDRYAGIETIDTTIETLSLLKELKLSEKSATVKTTSSSSLSLSFRHKTGLNCPEEFKCPISKQLMRDPVIVASGQTYDRTFIQKWLKSGNRTCPQTRQVLSHNILTPNYLIREMIEQWGRSQGIEFSNHVHYINSEEAMIEPDHGHFLSLLEKVSSSSLTEQKAAAKELRILTKKMPSFRVFFGEFSDAIAKLLKPICGSHSLGNVQPDLQEDVITTLLNISIQDNNKKLVAETPMVIPLLMRALRSGTIATRSNAAAALFTLSALDSNKELIGKSGALKPLINLLEEGHPLAMKDVASAIFTLCVLQENKARAVKDGTVKVIVNKIVDRVYVDELLAILALLSSHQKAIQDMGEIGAVPSLLSLIRETTCERNKENCIAILQTICLYDKTRLKEIKEEENRHKTISELAQNGTSRAKRKAAGILERLNRVVNVVHTA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1657 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 164 IPR013083 -
Mibi04g1657 477 CDD RING-Ubox_PUB 95 137 IPR045210 -
Mibi04g1657 477 FunFam RING-type E3 ubiquitin transferase 90 164 - -
Mibi04g1657 477 ProSiteProfiles U-box domain profile. 90 164 IPR003613 GO:0004842|GO:0016567
Mibi04g1657 477 SUPERFAMILY ARM repeat 183 467 IPR016024 -
Mibi04g1657 477 Gene3D - 171 472 IPR011989 -
Mibi04g1657 477 PANTHER U BOX DOMAIN-CONTAINING 21 467 - -
Mibi04g1657 477 SUPERFAMILY RING/U-box 89 166 - -
Mibi04g1657 477 FunFam RING-type E3 ubiquitin transferase 176 473 - -
Mibi04g1657 477 Pfam U-box domain 92 160 IPR003613 GO:0004842|GO:0016567
Mibi04g1657 477 SMART arm_5 305 345 IPR000225 GO:0005515
Mibi04g1657 477 SMART arm_5 263 304 IPR000225 GO:0005515
Mibi04g1657 477 SMART arm_5 385 426 IPR000225 GO:0005515
Mibi04g1657 477 SMART Ubox_2 94 157 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1657 Mibi-ChrMibi04 44641082 44644844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1657 153 477 U-box Gene Family AT3G07360 59.697 1.47e-131 382