Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1656 ATGGTGACATATGGTAATGGAGGAGGTTCTCCGTCATCGGCGGCTTCCCAAGCTGAGCACCTGAAGCGAATCGGAAACGTATACTTCAAGAAAGATCGTTTCAAGGAAGCAATCGATGCTTATAGCCAGGCAATTTCTCTGTGCCCTAACATTCCGGTTTATTGGACGAATCGTGCTCTGTGTCACCGTAAGCGCAATGACTGGGCTAGAGTAGAAGAAGACAGCCGGAGAGCTCTTCAACTGGACAACAAGTCAGTGAAGGCCCATTATATGTTGGGGCTTACATTGATGCAGAGACAAGATTATATCGAAGGGGTCAGAGAATTGGAGAAGGCTTTGGATCTCGGGAGGGGTGCTGATCCTAATGGCTATATGGTAGATGAGATCTGGCAGGAGCTTGCGAAAGCAAAATACCTTGAGTGGGAAAATGAATCTTCCAAGAGATCATTGGAATTGCACCATTTGAAAGAAGCTTGTGAGTGTGCTCTAAATGAAAAGCATTATCACTATGTCTCTCAAATGGAAGGGTTTATAGATGATGTTGTAGATCTCCACTCACAAGATCTTAATGCTTTAGAAAGGGTTTTCTGTGAAGCTGCAGAAGCTAGCATGCCTGGTGAGGTCCCAGATTACTTATGCTGTAGAATCACTCTCGAAATTCTTCGAGATCCTGTAATTACTCCAAGTGGACATACTTATGAGAGGGCAGTGATTCTTCAACACCTTGAAAAGAGTAAGTTTGATCCAATTACGCGGGAGCCACTTGATCCATCACAGCTTGTACCAAACTTGGCGATAAAGGAAGCAGTTCAGGCATTCTTGGATAAACATGGTTGGGCATACAAGCAATAG 852 0.4437 MVTYGNGGGSPSSAASQAEHLKRIGNVYFKKDRFKEAIDAYSQAISLCPNIPVYWTNRALCHRKRNDWARVEEDSRRALQLDNKSVKAHYMLGLTLMQRQDYIEGVRELEKALDLGRGADPNGYMVDEIWQELAKAKYLEWENESSKRSLELHHLKEACECALNEKHYHYVSQMEGFIDDVVDLHSQDLNALERVFCEAAEASMPGEVPDYLCCRITLEILRDPVITPSGHTYERAVILQHLEKSKFDPITREPLDPSQLVPNLAIKEAVQAFLDKHGWAYKQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1656 283 Pfam Tetratricopeptide repeat 19 50 IPR001440 GO:0005515
Mibi04g1656 283 CDD RING-Ubox_CHIP 208 273 IPR045202 -
Mibi04g1656 283 ProSiteProfiles U-box domain profile. 207 280 IPR003613 GO:0004842|GO:0016567
Mibi04g1656 283 SUPERFAMILY TPR-like 17 137 IPR011990 GO:0005515
Mibi04g1656 283 SMART tpr_5 86 119 IPR019734 GO:0005515
Mibi04g1656 283 SMART tpr_5 18 51 IPR019734 GO:0005515
Mibi04g1656 283 SMART tpr_5 52 85 IPR019734 GO:0005515
Mibi04g1656 283 Pfam U-box domain 208 279 IPR003613 GO:0004842|GO:0016567
Mibi04g1656 283 ProSiteProfiles TPR repeat region circular profile. 18 50 - -
Mibi04g1656 283 ProSiteProfiles TPR repeat profile. 18 51 IPR019734 GO:0005515
Mibi04g1656 283 SMART Ubox_2 211 273 IPR003613 GO:0004842|GO:0016567
Mibi04g1656 283 Pfam Tetratricopeptide repeat 87 115 IPR019734 GO:0005515
Mibi04g1656 283 Gene3D Tetratricopeptide repeat domain 11 148 IPR011990 GO:0005515
Mibi04g1656 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 281 IPR013083 -
Mibi04g1656 283 SUPERFAMILY RING/U-box 201 281 - -
Mibi04g1656 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 12 282 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1656 Mibi-ChrMibi04 44635695 44639486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1656 14 282 U-box Gene Family AT3G07370 63.333 1.26e-125 357