Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1568 ATGGTTCTGAGTAGCGGAATTTTCTGTGCTCGTGTTATTATTAGTAGTTTCTTGTTTCTGCTTAGTTGTAACATGGTCTATGGGACTGTGACTGATATCTTCTGCTTAAGAAGTATAAAAAATTCTCTTGAAGACCCATATGGTTATTTGAGGTCTTCCTGGGATTTCAACAACAACACGGAAGGATTTATCTGTAGATTTACTGGTGTTGAATGCTGGCACCCTGATGAGAACAAAGTCTTAAATCTAAAGTTGTCAAACATGGGGCTCAAGGGCCAGTTTCCTCGTGCAATTCAAAATTGCTCCAGCTTAACAGGATTGGATCTATCGATTAACAAACTTTCTGGAACAATTCCAGCAGATATCAATACTATCCTCAAATTTGTGACAACTCTTGATCTATCTTCGAACGACTTTTCTGGGACGATCCCTGTGAGTCTTGCAAATTGTTCTTATCTTAATTCCCTTAAACTGGATCAAAATCAACTCAGTGGGCAAATTCCTGGAGAATTAAGCACACTACCGAGGCTCAAGACATTTACTGTCACAAACAATCTTTTGACAGGGCCAATTCCAAACCTTCCGAAAATCACAGCTGATAGCTATACAAATAATCCTGGACTGTGTGGTCCCCCTTTGCAAGACTGCCAGGCTTCATCCTCCAAGAGTAACTCCGCAGTTATAGCCGGAGCAGCGGTTGGTGGGGTGACGGTTGGAGCATTAGTAATAGGTATTGGGTTGTTCTTCTTTGTCAGACGAGTATCTGTGATTAAGAAGGAAGAAGACCCTGAAGGCAACAAATGGGCAAGAAGTCTAAAGGGAACTAAAGGAATAAAGGTTTCAATGTTTGAGAAGTCAGTTTCAAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAGCTTCAGTAAAAGCAATATTATCGGGTCTGGAAGAACAGGAACGATGTACAAAGCTGCCCTTGAAGATGGCACATCACTCATGGTCAAGAGATTACAGGAATCTCAGCACTCTGAGAAAGAATTTCTGTCTGAGATGTCTACCCTTGGGGCTATCCATCATCGTAACATGGTTCCTCTTTTAGGTTTTTGCCTGGCTAAGAAGGAGAGGCTCTTGGTCTATAGTTTTATGTCAAATGGCACTCTTCATGATCAGCTGCATCCTGCTGAAGGTCAGAGCTCCCTTGAATGGCCAACAAGGCTTAAAATTGCCATTAGAGCAGCTAATGGATTGGCATGGCTTCACCATAGCTGCAATCCCCGAATCCTCCATCGTAACATAAGCTCTAAGTGCATCTTGTTAGATTCTGATTTTGAGCCCAAAATTTCTGATTTTGGCCTTGCTAGACTGATGAACCCAATTGATACACATTTGAGTACTTTTGTGAATGGGGAGTTTGGGGATTTAGGTTATGTTGCTCCTGAGTATGCAAGAACGCTGGTTGCTACACCTAAGGGAGATGTTTATAGCTTTGGGGTTGTTCTTCTCGAGTTGGTGACTGGTGAAAAACCCACCCATGTGGCTAAAGCTCCAGAAACATTCAAGGGAAGTTTGGTAGAATGGATTGCCGAACTCTCAAGCACCTCTGAACTGCAGACCGCCATTGATGAGTCATTAGTTGGGAAAGAATTTGATAATGAGCTTTTCCAATTTCTTAAGGTTGCATGCAACTGTGTTTCATCAACTCCAAAGGAGCGACCTACTTTGTTTGAAGTATACCAGTTTCTAAGAGCCATTGGGAGTAGGTACAATTTCACAACTGAGGATGAGATATTGGTACCTGTAGATATTGATGATACCGGAAACCTAGAGGAACTTATTGTGGCTCGAGAAGGGAATAATTGA 1845 0.4184 MVLSSGIFCARVIISSFLFLLSCNMVYGTVTDIFCLRSIKNSLEDPYGYLRSSWDFNNNTEGFICRFTGVECWHPDENKVLNLKLSNMGLKGQFPRAIQNCSSLTGLDLSINKLSGTIPADINTILKFVTTLDLSSNDFSGTIPVSLANCSYLNSLKLDQNQLSGQIPGELSTLPRLKTFTVTNNLLTGPIPNLPKITADSYTNNPGLCGPPLQDCQASSSKSNSAVIAGAAVGGVTVGALVIGIGLFFFVRRVSVIKKEEDPEGNKWARSLKGTKGIKVSMFEKSVSKMKLSDLMKATNSFSKSNIIGSGRTGTMYKAALEDGTSLMVKRLQESQHSEKEFLSEMSTLGAIHHRNMVPLLGFCLAKKERLLVYSFMSNGTLHDQLHPAEGQSSLEWPTRLKIAIRAANGLAWLHHSCNPRILHRNISSKCILLDSDFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGVVLLELVTGEKPTHVAKAPETFKGSLVEWIAELSSTSELQTAIDESLVGKEFDNELFQFLKVACNCVSSTPKERPTLFEVYQFLRAIGSRYNFTTEDEILVPVDIDDTGNLEELIVAREGNN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1568 614 CDD STKc_IRAK 308 576 - -
Mibi04g1568 614 Gene3D Ribonuclease Inhibitor 31 218 IPR032675 -
Mibi04g1568 614 Pfam Protein tyrosine and serine/threonine kinase 305 575 IPR001245 GO:0004672|GO:0006468
Mibi04g1568 614 ProSiteProfiles Protein kinase domain profile. 302 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g1568 614 CDD TM_EGFR-like 228 259 - -
Mibi04g1568 614 Gene3D Transferase(Phosphotransferase) domain 1 377 594 - -
Mibi04g1568 614 Gene3D Phosphorylase Kinase; domain 1 263 376 - -
Mibi04g1568 614 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
Mibi04g1568 614 SUPERFAMILY L domain-like 30 214 - -
Mibi04g1568 614 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 50 193 - -
Mibi04g1568 614 FunFam Nuclear pore complex protein NUP107 29 193 - -
Mibi04g1568 614 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Mibi04g1568 614 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 263 376 - -
Mibi04g1568 614 FunFam Leucine-rich repeat receptor-like protein kinase 377 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1568 Mibi-ChrMibi04 42409300 42411678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1568 18 590 Receptor kinase-like Gene Family AT3G28450 47.513 3.17e-180 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Mibi04g1568 PK_Tyr_Ser-Thr 2e-39 CL0016