Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1541 ATGGAGAGAGCTTCACTATTCCAAAGGAAACACAAAAACCCTTCCTTCTTCAAGGTTCTAATCCAAGATTTCTCTACCCGCTTGCTAATCCCCCAGGCTTTTAACGAGGCGTTTGGTAAAGAGGTGCCAAAGAAAGCAATTCTTGAAACTTATTATGGAAAATCTGAAGAAGTCGAAGTGGAAAAGCATGAGAATAGATTATGTTTCTGCAAAGGATGGGGTAAATTTGTTGAGGATAATAAATTAGAGAATGGAGATTTTTTAGTGTTCAAATATGTGTCAAATTGTTCAAAGTTCAAGGTCAAGATCTATGGCAAAACATGCTGCGAGAAGAAATATTATTATTCTACTTATTCAGAAAGTGGAAAAAATGAAAAAGAGAGAAATCATAAGAAAAATGTTGGGGATGGACAAAAAAGAAAGAGGAAAGAAGAAAAAGAAAAGGATAATAATAATGTGAAAGAAGATGGAGCAGTGAAATCTGCAAAAATATTTGAGTCAGATTCTGATTCTGATTTTGGAGACGAAGATTCTGAAGATAAACTAATCAATATTGATTCTGATTCAGATTCAACCCATCCTGTCGCCGAAGAAGAAGAAAATGGTAATTCGAAGCAGCCGTTGAGGGAAGAGAAGGAGAATGGAGACGCCAAAAGATTGCATAGTGATAACCAAATAGACTTCGAATCTGAGTGTCCTTTCTTCCAAGTCAAGCTGAAATCTTCAAGTATCAATCACTATCTGAATATACCATTAAACTTTTCAAGGAAATATATAAAGGAGAGTCAAAGCCAGGAGATCAAACTTGAGATGCCCAACAAAAAAGTGTGGCAATTGGGCCTTTTGGTACTGTGGGTAGGTGGTGGTAACAAGAAGGAAATGGTGGGAGCAAGAGTAAGTCAAGGATGGAAGAACTTGGTCTCAGAATATCACCTCCAATTGGGAGATTATTGCATCTTTGAACTGATCCAACCAACTCATGTCCTTGTCTTTCGCCTTCATGTTCTTCGATGGGATTCTCAAACCAACAAGTTTAATCGCATACTTTAG 1050 0.3714 MERASLFQRKHKNPSFFKVLIQDFSTRLLIPQAFNEAFGKEVPKKAILETYYGKSEEVEVEKHENRLCFCKGWGKFVEDNKLENGDFLVFKYVSNCSKFKVKIYGKTCCEKKYYYSTYSESGKNEKERNHKKNVGDGQKRKRKEEKEKDNNNVKEDGAVKSAKIFESDSDSDFGDEDSEDKLINIDSDSDSTHPVAEEEENGNSKQPLREEKENGDAKRLHSDNQIDFESECPFFQVKLKSSSINHYLNIPLNFSRKYIKESQSQEIKLEMPNKKVWQLGLLVLWVGGGNKKEMVGARVSQGWKNLVSEYHLQLGDYCIFELIQPTHVLVFRLHVLRWDSQTNKFNRIL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1541 349 CDD B3_DNA 233 334 IPR003340 GO:0003677
Mibi04g1541 349 CDD B3_DNA 14 104 IPR003340 GO:0003677
Mibi04g1541 349 ProSiteProfiles B3 DNA-binding domain profile. 13 107 IPR003340 GO:0003677
Mibi04g1541 349 ProSiteProfiles B3 DNA-binding domain profile. 233 339 IPR003340 GO:0003677
Mibi04g1541 349 Pfam B3 DNA binding domain 16 105 IPR003340 GO:0003677
Mibi04g1541 349 Pfam B3 DNA binding domain 234 326 IPR003340 GO:0003677
Mibi04g1541 349 Gene3D - 7 109 IPR015300 -
Mibi04g1541 349 SUPERFAMILY DNA-binding pseudobarrel domain 228 334 IPR015300 -
Mibi04g1541 349 PANTHER B3 DOMAIN-CONTAINING 10 325 - -
Mibi04g1541 349 SUPERFAMILY DNA-binding pseudobarrel domain 11 113 IPR015300 -
Mibi04g1541 349 MobiDBLite consensus disorder prediction 120 223 - -
Mibi04g1541 349 MobiDBLite consensus disorder prediction 178 223 - -
Mibi04g1541 349 SMART B3_2 16 107 IPR003340 GO:0003677
Mibi04g1541 349 SMART B3_2 234 334 IPR003340 GO:0003677
Mibi04g1541 349 MobiDBLite consensus disorder prediction 121 169 - -
Mibi04g1541 349 Gene3D - 213 339 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1541 Mibi-ChrMibi04 41904827 41907142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1541 13 330 B3 DNA Binding Superfamily AT5G18090 26.549 6.72e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mibi04g1541 B3 4.1e-12 CL0405