Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1521 ATGAGGGCGACCTTCTCTGCTTCCATTTTCTTCTTCTTCGTGTTAGCGAAGGCGATTGCAGGAGCCATGGTGTATGTTAAGGCTCAAAAATCAAAGGCCTACTTCAAGAGGTATCAAGTCAAGTTTAAGAGAAGAAGAGAGGGAAAAACTGATTACCGAGCTAGGATTCGGTTGATCAATCAAGACAAGAACAAGTACAACACTCCCAAATATCGCTTTGTTGTTCGATTTACAAACAAAGATATTATTGCTCAAATAACATCTGCTAGTATTGCTGGTGATATTGTTCTTGCTGCTGCATATGCACATGAGTTGCCTCACTATGGTCTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCACTGGTCTTCTTTTGGCCCGTCGAGTCCTTAAAATGCTTGAAATGGAAGAGGAGTATGAGGGTAATGTAGAGGCATCAGGAGAGGACTTTTCGGTTGAACCTTCTGATACTAGGAGGCCTTTCCGTGCTTTACTTGATGTTGGTCTTATCAGGACTACAACTGGAAACCGTGTCTTTGGTGCCCTTAAGGGAGCATTGGATGGGGGATTAGATATTCCTCACAGCGACAAGAGGTTTGCTGGTTTTAACAAGGATAAGAAAGATCTTGATCCTGAGGTTCATCGCAAATATATCTACGGTGGTCATGTTGCTTCATATATGAATACTCTGGCAGAAGATGAGCCAGAGAAATACCAGTCACACTTTAGCAAATATATCAAGCAAGGATTAGAGGCCGATAGGCTTGAGGAGATGTACAAAAAGGTCCATGCTGCCATTCGTGCCGACCCCACAGTGAAGAAGTCTGAGAAGCAGCCACCAAAGGAACACAAGAGATTCAACCTGAAGAAACTTACATATGAGGAGAGGAAGGCCAAGTTGGTTGCACGTTTGCAGGCTCTCAACTCTGCAGTCGATGCAGATGAGGACGATGAGGATGATGAGTAA 972 0.4362 MRATFSASIFFFFVLAKAIAGAMVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDIVLAAAYAHELPHYGLEVGLTNYAAAYCTGLLLARRVLKMLEMEEEYEGNVEASGEDFSVEPSDTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFNKDKKDLDPEVHRKYIYGGHVASYMNTLAEDEPEKYQSHFSKYIKQGLEADRLEEMYKKVHAAIRADPTVKKSEKQPPKEHKRFNLKKLTYEERKAKLVARLQALNSAVDADEDDEDDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1521 323 Hamap 50S ribosomal protein L18 [rplR]. 36 268 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 FunFam 60S ribosomal protein L5 23 313 - -
Mibi04g1521 323 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 36 197 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 PANTHER RIBOSOMAL PROTEIN L5-RELATED 23 312 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 CDD Ribosomal_L18_L5e 63 192 - -
Mibi04g1521 323 PRINTS Ribosomal protein L5 signature 186 205 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 PRINTS Ribosomal protein L5 signature 42 61 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 PRINTS Ribosomal protein L5 signature 106 126 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 PRINTS Ribosomal protein L5 signature 228 248 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 PRINTS Ribosomal protein L5 signature 65 84 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 PRINTS Ribosomal protein L5 signature 166 185 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mibi04g1521 323 Gene3D - 23 313 - -
Mibi04g1521 323 MobiDBLite consensus disorder prediction 272 291 - -
Mibi04g1521 323 Pfam Ribosomal L18 C-terminal region 257 310 IPR025607 -
Mibi04g1521 323 SUPERFAMILY Translational machinery components 33 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1521 Mibi-ChrMibi04 41401516 41404625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1521 23 312 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.759 0.0 508