Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1468 ATGATCGGGCGCGTGGCATGGCAGGCGCGTGAAGACCCTTCCTCTTCTTCTTCTCCTCACTCACTCTCTGTTTTGGTTTCCCGGAAAGTTACTCTGTTTTCTTTCTTTCTCAGAGAAAAAATGGCGGAGAAAGATGATGGATTGGGCTTAGGTTTGAGTCTAAGCTTGGGTTTGGGAATGAATCCTTCTTCTTCTTCTTTGAAAGAAAGTGTCATGCAGAATAAGAAGCCTTTGAATCAGAGAACTTCATGGAATGATATTTTCCACCTTCCTGATCGGAGCTGCGAGGCAAGAACGTTACTCCGGGGAGTGGATGTGAATTTAGCGCCGCCACCTCCGCCGCCGTCCACGGCGGCGCCGGACGGCGACGATGAGAATGGCGTATCGTCGCCGAACAGTACTGTGTCAAGCATCAGTGGGAAGAGAAGTGAGAGAGAGTCTATCGGCGGTGGCGAGCACGAAGCCGAGCGCGCGTCGTGCTCACGGGGCAGCGACGATGACGACGGCGGCGACGGCGACGGATACGGCGGAGGGGACGGCGGAGATGGCGACGGAGATACTTCGAGGAAGAAGCTCCGGCTGACTAAGGAACAATCTATTGTGTTGGAGGAAACATTCAAGGAGCATAATACCCTTAATCCGAAGCAAAAACAGGAATTGGCTAAACAGCTGAATCTGAGGCCGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGGGCAAGGACTAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAGGAGATGTTGTGAGACTTTGACTGAAGAGAATAGGAGGCTGCAAAAGGAAGTGCAAGAACTTAGGGCCTTAAAACTATCCCCACAATTCTACATGCACATGAATCCTCCCACCACTCTTACAATGTGCCCTTCGTGCGAGCGCGTCGCCGTCTCATCCACATCCTCCTCGTCCTCATCAGTAGCTGCCACCACCGCCGGCGGAACTCCCCCCGCTATAGGTTCATCCAACTCGGCCCCATTGAGCTCCAGCATTCAGAGGCCCATGCCCCTCCTCCCCTGGGCTGTGGCTAACTCAAACCGAAATTGCCCGGCCGACCGTCCATAA 1089 0.5317 MIGRVAWQAREDPSSSSSPHSLSVLVSRKVTLFSFFLREKMAEKDDGLGLGLSLSLGLGMNPSSSSLKESVMQNKKPLNQRTSWNDIFHLPDRSCEARTLLRGVDVNLAPPPPPPSTAAPDGDDENGVSSPNSTVSSISGKRSERESIGGGEHEAERASCSRGSDDDDGGDGDGYGGGDGGDGDGDTSRKKLRLTKEQSIVLEETFKEHNTLNPKQKQELAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCETLTEENRRLQKEVQELRALKLSPQFYMHMNPPTTLTMCPSCERVAVSSTSSSSSSVAATTAGGTPPAIGSSNSAPLSSSIQRPMPLLPWAVANSNRNCPADRP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1468 362 MobiDBLite consensus disorder prediction 311 338 - -
Mibi04g1468 362 MobiDBLite consensus disorder prediction 126 143 - -
Mibi04g1468 362 MobiDBLite consensus disorder prediction 145 169 - -
Mibi04g1468 362 CDD homeodomain 189 246 IPR001356 GO:0003677
Mibi04g1468 362 Pfam HD-ZIP protein N terminus 41 146 IPR006712 GO:0005634
Mibi04g1468 362 Pfam Homeodomain 189 243 IPR001356 GO:0003677
Mibi04g1468 362 SMART HOX_1 187 249 IPR001356 GO:0003677
Mibi04g1468 362 Coils Coil 251 281 - -
Mibi04g1468 362 MobiDBLite consensus disorder prediction 105 190 - -
Mibi04g1468 362 SUPERFAMILY Homeodomain-like 174 246 IPR009057 -
Mibi04g1468 362 Pfam Homeobox associated leucine zipper 245 279 IPR003106 GO:0006355|GO:0043565
Mibi04g1468 362 Gene3D - 181 250 - -
Mibi04g1468 362 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 52 318 - -
Mibi04g1468 362 MobiDBLite consensus disorder prediction 1 21 - -
Mibi04g1468 362 FunFam Homeobox-leucine zipper protein 18 178 250 - -
Mibi04g1468 362 ProSitePatterns 'Homeobox' domain signature. 220 243 IPR017970 GO:0000981|GO:0006355
Mibi04g1468 362 ProSiteProfiles 'Homeobox' domain profile. 185 245 IPR001356 GO:0003677
Mibi04g1468 362 SMART halz 245 288 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1468 Mibi-ChrMibi04 39995144 39998678 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1468 56 302 Homeobox Transcription Factor Family AT3G60390 61.004 9.10e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi04g1468 HD-ZIP_N 4.9e-29 No_clan