Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1377 ATGAATGACTTAGGGTACACCTTGACGTTGTTCTTCATCGTAATCCTTATATGCTTTATCCTTTCAGTAATATCCTATCTTTGCACCACACAGTCCAACAACACAGCAAGGCAATCTTCAGATGGTAATGTCGTTCTTGACGCTACGGAGACGAACCAGATCGCAAGGATGGTGACGGTAACCGTGACGGTGGAGGAGCCATGCTTGGTGGATCAGACTAGGGTTTGCAGTTCATCATCATCGTCGACATCCAATAATAATTTGTGTGGTAATAATAAAGAGGGTGCTGAAGATGGTGTTTCAAGTCCTTGTTGCTGCTCAATATGCTTGATGGATTATAAAGAATCTGATCTCTTGCGAGTTCTCCCAGATTGTGGCCATTTCTTTCATGTCAAGTGTATTGATCCTTGGTTCATTATGCATTTGACATGCCCTATTTGCAGGACTACAGTCAAAAATTCTTCTAGCATATCCTAG 477 0.4214 MNDLGYTLTLFFIVILICFILSVISYLCTTQSNNTARQSSDGNVVLDATETNQIARMVTVTVTVEEPCLVDQTRVCSSSSSSTSNNNLCGNNKEGAEDGVSSPCCCSICLMDYKESDLLRVLPDCGHFFHVKCIDPWFIMHLTCPICRTTVKNSSSIS 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1377 158 CDD RING-H2_PA-TM-RING 105 148 - -
Mibi04g1377 158 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Mibi04g1377 158 Pfam Ring finger domain 106 148 IPR001841 -
Mibi04g1377 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 157 IPR013083 -
Mibi04g1377 158 SMART ring_2 106 147 IPR001841 -
Mibi04g1377 158 SUPERFAMILY RING/U-box 105 153 - -
Mibi04g1377 158 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 151 IPR045899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1377 Mibi-ChrMibi04 36723251 36723727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1377 105 158 C3H Transcription Factor Family AT5G06490 57.407 3.42e-20 80.9