Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1330 ATGCCATTTCCCCTCTCCACGCATTTACTCCCTCCTTCCACCCACCAACATCACGTGCCCCTCACGTGCATCCCCCTCCCTCCATTTATATACCCTCCTTTCTCTCTTTCCCTCCTCTTCTTATTTTTCCTCTCTTTTCTTCTCTCTCTCTGTTTCTTTGTTAATTCAGCCATGGATTCTTCTCCACCACCTTACACACTAAACATCATCGGATCAGACACCACTTCTTCTTCTTCTTCTTCTTCATACAACGATCCTTCTTCTTCTTCTTCTCAGCATTTCCCCTCCGCTTTCCAGAACCTCAACACAAGCGTCCTCATCATCGTCATCGTCCTCGCCGTCACCGTCACCGTCTCCCTCACTCTCTGTCTCCTCCTCCGCCACCTCAACCTCCGTTTCCTCCGCCGTCTCTCTCCGTCATCCAGAAGAAACTCATCATCTCCGTCAACTGCTACTTCCACTCCCACTTCCATGCCTGTTTTCTCCTCCAGCCGCCGTGTCTCGCCGGAGATTCAATCTTCTTCGGTCATCGATTCGCTTCCGATCTTCACATTCTCTTCAATCACTCGCCGATCCTCCGCCTCCGACAACAACAACAACACTATCAACAATGGAGCCGATTGTGCCGTTTGCCTCTCGAAATTTGAACAACGAGACCTTCTCCGTCTTCTTCCTTTATGCTGCCATGCTTTTCATGTGGAATGTATTGATGTTTGGCTTCAGTCCAATTTGACCTGTCCGTTGTGCCGATCTGCGATTTTCGCCTCTGATCAAGACCTAATGAAGGCTCTCCAATCATCTTCTCTCGCCGCCGGAAACAACGGCGGCAGCGGCGGCGACAGTTTCCGGCTGGAAATCGGAAACATCAGCCGCCGTGGTACGGACGGAACCGGTGACTCAGCGGCGGCGGCGCGTGCGAGATCGGGATCGAGGTCGAGGTCGTATTCTGTTGGATCGTTTGAGTATTATGTTGAGGAGGATTTGAATTTCGAGGTTCCTTACAGCCACGCGCGTAATCGGAGCGCGTCGGAGAACAAAGACGAGGCGGCGGCAGAGGCGGCGGCGCGTGAGGCTAGCTTAGCCGGCGATGTGGCTGGGAGTGGGAGGAGTTGGCTGAAGGAATATATGGATAGGCTTTCTTCTTCTATATCTTCGAGGACTGTTTCATTTCGAGGTTCTGGAAGGTTCTTCACCGGCGGCGGAAGCCACCGGAGTGATGCCGGAGTTTCAATCGATGAATGTGATGTGGAAGCTATGAGATTAGGGGAAGAAATTAGCGAAACTTTCCGTTGGCTCTCAGGGGTATGA 1308 0.5199 MPFPLSTHLLPPSTHQHHVPLTCIPLPPFIYPPFSLSLLFLFFLSFLLSLCFFVNSAMDSSPPPYTLNIIGSDTTSSSSSSSYNDPSSSSSQHFPSAFQNLNTSVLIIVIVLAVTVTVSLTLCLLLRHLNLRFLRRLSPSSRRNSSSPSTATSTPTSMPVFSSSRRVSPEIQSSSVIDSLPIFTFSSITRRSSASDNNNNTINNGADCAVCLSKFEQRDLLRLLPLCCHAFHVECIDVWLQSNLTCPLCRSAIFASDQDLMKALQSSSLAAGNNGGSGGDSFRLEIGNISRRGTDGTGDSAAAARARSGSRSRSYSVGSFEYYVEEDLNFEVPYSHARNRSASENKDEAAAEAAAREASLAGDVAGSGRSWLKEYMDRLSSSISSRTVSFRGSGRFFTGGGSHRSDAGVSIDECDVEAMRLGEEISETFRWLSGV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1330 435 Pfam Ring finger domain 207 250 IPR001841 -
Mibi04g1330 435 SMART ring_2 208 249 IPR001841 -
Mibi04g1330 435 SUPERFAMILY RING/U-box 182 256 - -
Mibi04g1330 435 FunFam E3 ubiquitin-protein ligase ATL6 161 256 - -
Mibi04g1330 435 ProSiteProfiles Zinc finger RING-type profile. 208 250 IPR001841 -
Mibi04g1330 435 MobiDBLite consensus disorder prediction 139 166 - -
Mibi04g1330 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 100 346 - -
Mibi04g1330 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 254 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1330 Mibi-ChrMibi04 34517014 34518321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1330 174 302 C3H Transcription Factor Family AT2G20030 39.535 3.94e-21 92.8