Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1266 ATGGAAAGTGATAATAACTTCTCTACCACACCATCTTCTTCCTCCTCCTTTTCTTCTTCTTCTTCTTCATCTTCATCATCCGCGTCAACATCAACAACAGTTTCATGTTTGAAATTCAAGCATGATCAGTCTGAAAGTGATGATCTAAATGGTAATAAGCATCAACAGAGCAAAAAGAAGAAGAAGAAAAGACATAGAAGTGAAAGTGATTGTGGTGATGACAATACTGAAGATCAAGGTAATAATGATAACAACAATAATAAGCATTCTACTTATAGAGGTGTGAGAATGAGAGCTTGGGGAAAATGGGTTTCTGAAATTCGTGAGCCAAGAAAGAAGTCAAGAATTTGGCTTGGAACATATCCTACTGCCGAAATGGCCGCTCGAGCCCATGATGTAGCCGCTTTAGCCATCAAAGGTCAATCGGCTTATCTCAATTTCCCAGAATTAGCTCACCGGCTTCCCCGGCCGGCTAGCTCGGCTCCCAAGGACATTCAAGCCGCGGCTTCAAAGGCGGCAGCCACCGTGTTCAATGATCAGGTCAAACACTGTCAAGCCGAGGTAGAAGCAGCCTGCAGAGGAGCCGAGCCGAGTCATGGAGAGCAAGCCACTTCTTCTTCTTCTACTACTTTTTCTTCTTCAAGTTCTGTTCCTGAGGATGAAGACACATTATTTGACTTACCAGATCTCTTCACTGATGGGGACATTAATGGAGTTTGCTCATATTCTTCTTGGAATTTATGTGCAGTAGTTGATAGTGTTTTAAGCCATGATGAGCCATTTTTGTGGGAGAAATATTAA 801 0.4245 MESDNNFSTTPSSSSSFSSSSSSSSSSASTSTTVSCLKFKHDQSESDDLNGNKHQQSKKKKKKRHRSESDCGDDNTEDQGNNDNNNNKHSTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGQSAYLNFPELAHRLPRPASSAPKDIQAAASKAAATVFNDQVKHCQAEVEAACRGAEPSHGEQATSSSSTTFSSSSSVPEDEDTLFDLPDLFTDGDINGVCSYSSWNLCAVVDSVLSHDEPFLWEKY 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1266 266 MobiDBLite consensus disorder prediction 192 220 - -
Mibi04g1266 266 ProSiteProfiles AP2/ERF domain profile. 91 148 IPR001471 GO:0003700|GO:0006355
Mibi04g1266 266 SMART rav1_2 91 154 IPR001471 GO:0003700|GO:0006355
Mibi04g1266 266 MobiDBLite consensus disorder prediction 1 92 - -
Mibi04g1266 266 MobiDBLite consensus disorder prediction 40 54 - -
Mibi04g1266 266 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 58 233 - -
Mibi04g1266 266 PRINTS Ethylene responsive element binding protein signature 92 103 IPR001471 GO:0003700|GO:0006355
Mibi04g1266 266 PRINTS Ethylene responsive element binding protein signature 114 130 IPR001471 GO:0003700|GO:0006355
Mibi04g1266 266 SUPERFAMILY DNA-binding domain 90 149 IPR016177 GO:0003677
Mibi04g1266 266 Pfam AP2 domain 92 140 IPR001471 GO:0003700|GO:0006355
Mibi04g1266 266 PIRSF PTI6 160 259 IPR017392 GO:0003700
Mibi04g1266 266 PIRSF PTI6 5 179 IPR017392 GO:0003700
Mibi04g1266 266 MobiDBLite consensus disorder prediction 199 220 - -
Mibi04g1266 266 Gene3D AP2/ERF domain 91 149 IPR036955 GO:0003700|GO:0006355
Mibi04g1266 266 MobiDBLite consensus disorder prediction 78 92 - -
Mibi04g1266 266 MobiDBLite consensus disorder prediction 1 39 - -
Mibi04g1266 266 FunFam Ethylene-responsive transcription factor 2 90 149 - -
Mibi04g1266 266 CDD AP2 90 150 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1266 Mibi-ChrMibi04 31285479 31286279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1266 84 262 AP2-EREBP Transcription Factor Family AT2G44940 52.709 2.81e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi04g1266 AP2 1.4e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g1266 04 31285479 31286279 Mibi04g1266 04 31285479 31286279 ECH