Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1265 ATGCTGGGAAATGTGTTTTCTGATAAGGATATTTTGATCTTTTCGCCAGTTGGTTGTCGATCCACTGTTGAGGATGATCTTCTTAGTCGACTTGAGCAAACTGGCGCAACTGAAAGTTCCTCCACATATAGTTGGGCTAACCAGATGGTGGAGCAGAGACAAGCTACTGTTGAAAAAGCTAAGAGTATTATGCAAAATATTGTGGCAGCTATCAATAACCTTTGGTGTCTGAAAGATGGATTGCATGCTGCAGTGTTCACAAAATTTCCAGATGATGGTATGTGTGGTCGGAAGTCCTCCATTGATCTAAATATGGAAATTAAAACCTTGAGATCAGCGTTTACTGAGCTTCATTTAAAGCACAAGTCTTTGGCTAGTGAGTTTCGAAGTCATCGAGATGTTGATGCCAAAAATAAGGTCGAGATTAAAAGATTGAAAGGGGAACTGGCAAGCACTATTGCAGAACTGGAAGAAAGTAATCACAAATTGGCAACTCTTAGGGCAGAGAGAGATGCAGCGAAAGGGGCAGTTTTTCCTGTCTTAAATGTGGGAACTAAGCATGCTGCTAATGATAAGATCAAAGACAAGCAAAAGGATTTGCAAGATATGGAATCTTCTTTAAAGGAGATATTGGACCAAGGATCCTCCAGGCTAATGGAATTGAAAAATCTTCACGAGGAAAGAATTAGGATATTACAGCAAATGTGTGATTTACAAAACACAGTGAAGAATTTGAAGTGTATTACTTCTTCACATGCATTCCAACTGGCAAGAGATCAGATGGAACAATCAAAAGTAGAAGTTCTTGAGTATCAGACCTTATTTGAGAAACTACAGGTTGAGAAGGACAATCTTGCTTGGAGGGAGAGGGAGTGGTACATAAAGAGTGATCTGGTAGATGTTTTTCAAAGGTCCATGTCAGTTGTTGAATCTAAAGTGGCTGATTTAGGGACTGAAATAAAGAAGAAAATTGAGGAGAGAAATGTGTTAGAAAATAAACTGCAAGAGGCAGCAAGGGAACCAGGAAGGAAGCAAATTATTGCAGATTTTAAATCTCTGCTTTCTTCATTTCCGGAGGAAATGGGATCTATGCAAAGTAAATTGAGTAAGTATAAAGAAGCAGCTTCAGACATTCATTCTCTGCGTGCAGATGTACAATCTCTGTCTAGTATTCTTGAGAGGAAGATAAAACAATGTGATGTTTTATCTAATAAATCTGCCGATCAACTTGCTGAGATACAGAGGCTGCTTGCTGTGGTCAATGATTTGAGAGAAAGTGAGCTAGAGTTGAAGTTGATTCTGGAAATGTATAGACGTGAATCCATTGATTCAAGGGATGTTGTGGAGGCACGGGATTCAGAATACAGAGCATGGGCCCGTGTTCAAAGTTTGAAATCTTCCCTCGGTGAACACAACTTGGAGCTTCGAGTCAAGACGGCAAATGAAGCAGAGGCTAGATCTCAGCAGAGGCTTGCTACTGCTGAAGCTGAGATAGTAGACTTGAGACAGAAACTAGATGCTTCAAAAAGGGAGAAGGGTAAACTCTCCGATGTCTTGAAATCGAAAAGTGAGGAAATTGAGGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGATATGCAAACCCAAAACCAACATCTGTTGCACCAGATTACTGAAAGAGATGACTACAATATCAAGCTTGTCCTAGAGGGTGTGAGGGCAAGACAGAAGCAGGAATCTTTGATCATGGAGAAGCAGGCTATTGAACGGGACATCCAGCAATCAAATGCATCTCTTAATTTTTATGACATGAAAGCTGCCAGGATTGACGACCAGTTAAAGTCGTGTTCAGATCAGTATAAGAGACTTGAGGAGGATAAGGTTCAAAGTTCTGTTACATTGGAAAATACACAAAGGAGATTGTTGGATGTCAGAAGATCATCTCAACAAGCCAGAGAAACTGTGGAGGAAGTGCAATCTAAAGTTGGTTTTAGTCGAGTAACTCATATGGAGTTACAAGTAGACCTGGAGAGAGAAAGGTTTGCCAGGAAAAGATTAGAGGAGGAGCTGGAGATTGCCAGGAGAAAGGTTTCATACCTTCAGGCGCAGATTGAGGGCTCCCCTGTTATTGAAAAGCTTCAGCAGGAACTAGGGGAATACAGGGAAATTGTCAAATGCAGTGTCTGCCAAGACAGGACAAAAGAGGTTGTAATTACAAAATGCTATCACTTGGCCTGCAATCCATGCATCCACAAAGTTGTTGAGAGTAAGCATCGCAAGTGTCCATTATGTGCTGCAAGCTTTGGGCCGAATGATGTAAAGCCCATTTACTTGTAA 2328 0.4081 MLGNVFSDKDILIFSPVGCRSTVEDDLLSRLEQTGATESSSTYSWANQMVEQRQATVEKAKSIMQNIVAAINNLWCLKDGLHAAVFTKFPDDGMCGRKSSIDLNMEIKTLRSAFTELHLKHKSLASEFRSHRDVDAKNKVEIKRLKGELASTIAELEESNHKLATLRAERDAAKGAVFPVLNVGTKHAANDKIKDKQKDLQDMESSLKEILDQGSSRLMELKNLHEERIRILQQMCDLQNTVKNLKCITSSHAFQLARDQMEQSKVEVLEYQTLFEKLQVEKDNLAWREREWYIKSDLVDVFQRSMSVVESKVADLGTEIKKKIEERNVLENKLQEAAREPGRKQIIADFKSLLSSFPEEMGSMQSKLSKYKEAASDIHSLRADVQSLSSILERKIKQCDVLSNKSADQLAEIQRLLAVVNDLRESELELKLILEMYRRESIDSRDVVEARDSEYRAWARVQSLKSSLGEHNLELRVKTANEAEARSQQRLATAEAEIVDLRQKLDASKREKGKLSDVLKSKSEEIEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQESLIMEKQAIERDIQQSNASLNFYDMKAARIDDQLKSCSDQYKRLEEDKVQSSVTLENTQRRLLDVRRSSQQARETVEEVQSKVGFSRVTHMELQVDLERERFARKRLEEELEIARRKVSYLQAQIEGSPVIEKLQQELGEYREIVKCSVCQDRTKEVVITKCYHLACNPCIHKVVESKHRKCPLCAASFGPNDVKPIYL 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1265 775 ProSiteProfiles Zinc finger RING-type profile. 723 761 IPR001841 -
Mibi04g1265 775 Coils Coil 603 651 - -
Mibi04g1265 775 Coils Coil 186 213 - -
Mibi04g1265 775 Coils Coil 142 176 - -
Mibi04g1265 775 Pfam Zinc finger, C3HC4 type (RING finger) 721 763 - -
Mibi04g1265 775 Coils Coil 666 700 - -
Mibi04g1265 775 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 775 IPR013083 -
Mibi04g1265 775 Coils Coil 313 340 - -
Mibi04g1265 775 SMART ring_2 723 761 IPR001841 -
Mibi04g1265 775 SUPERFAMILY RING/U-box 715 774 - -
Mibi04g1265 775 CDD RING-HC_BRE1_like 721 762 - -
Mibi04g1265 775 PANTHER RING FINGER PROTEIN-RELATED 25 775 IPR013956 GO:0004842|GO:0010390
Mibi04g1265 775 Coils Coil 477 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1265 Mibi-ChrMibi04 31232378 31251069 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1265 703 774 C3H Transcription Factor Family AT3G58030 32.895 4.15e-08 54.7