Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1258 ATGACGCACGCGCCGCCGACTCGCCGCCTAAACTCGAAGAGCTTGGGATCAAGGCGACCCTTAAACCCCATCAGGTGGAAGGAGTTTCGTGGCTCATACGAAGATATAAACAAGGCGTCAACGTCCTCCTCGGTGAGATTTTCATCTTTAATCTCTATTTCTGTTTTTGGGTTTCTCAGAAGTTTTTCAATTAATTGTCCAAGTAGTGTGCTTCGCAGTGTGGATATGGGACTGGGCAAGACATTACAAGCTATCTCCCTATTGAGCTATTTAAAAGAGTACCACTTGTCAGTTGGACCGTTTTTGGTTTTATGTCCTCTAAGCGTAACAGATGGCTGGGTTTCAGAGATCGTTAAATTTTCACCCAAACTAAAAGTAACTAAATATGTTGGAGGGAAAGAATTTAGGTGCAGCCTTCGCAGGAATATTTATGAACATGTAAAAGGACAGTCAACAGAAGTCAATGCCTTGTTACCTTTTGACGTTCTATTAACAACTTATGATATAGCACTGATCGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATATAATGTTCTCAAAGAGCGATATGTCATGCCGAGACGGTTGTTGATGACGGGTACTCCTATTCAGAACAACCTTTCTGAACTGTGGGCATTGATGCATTTTTGTATGCCTTCTGTCTTTGGTACACTAGAACAGTTCCTTACCACATTTAAGGATATCAGTGATCCTACATCAGTTCAAAATACAGTGAAGGCAAAGGAACAACTTAAAATACTGAAAAGTATTTTAGGAGCTTTTATGCTTCGACGGACTAAGTCAAAGCTTATAGAGAGTGGCACTCTTGCGTTACCATCTCTTACTGAGATAACTGTGTATGTGATCCAGCTAAGGAAAGCATGTAGCCATCCTTATCTTTTTCCAGGTATTGAGCCTGAGCCATATGAAGAGGGTGAACATCTGGTTCAGTACTTTCTGGAGTTACGAAAATATTCCTATGCGCGTCTTGATGGGTCAATTAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGACCGTCGGCTAATTCAGTTTTAAATTCTGAATCAGACCAAAGTGGAGCCTTTGTCTTCTTGATCACAACAAGAGCTGGAGGAGTTGGCTTGAATCTTGTGGCTGCTGATACGGTTGTATTCTATGAGCAGGATTGGAATCCTCAAGTAGACAAGCAGGCGTTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTATTGTGCATAAAACTTGTTACAGAAAGAACAGCAGAGGAGGTAATTATGCGGAGGGCAGAGAAAAAATTGCTGCTTAGCCTTAACGTCATAGATGAAAACATTCAGGAACATGAAGAGGAGCAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTGCATATGTTTGATCCCAATGAAAACAATGATGGAGAGCGTGGTAACATGGAGTTGTCAGAAATTAATGCCATGACTGACAAGGTGATTGCAATGCGTGGTGTACATATATCTGACAAGGATGATAGAAAATTTGAGATCAACCCCAGAAATCTTTTGGAATCATATGATGCTAAGGAAGGTGCTTCTACTTCTTTCAACTCTGATCCTAGTCTTGATGAGGCTTCTTATCTTTCCTGGGTTAAAAAATTATAG 1719 0.4107 MTHAPPTRRLNSKSLGSRRPLNPIRWKEFRGSYEDINKASTSSSVRFSSLISISVFGFLRSFSINCPSSVLRSVDMGLGKTLQAISLLSYLKEYHLSVGPFLVLCPLSVTDGWVSEIVKFSPKLKVTKYVGGKEFRCSLRRNIYEHVKGQSTEVNALLPFDVLLTTYDIALIDQDFLSQIPWQYAIIDEAQRLKNPSSVLYNVLKERYVMPRRLLMTGTPIQNNLSELWALMHFCMPSVFGTLEQFLTTFKDISDPTSVQNTVKAKEQLKILKSILGAFMLRRTKSKLIESGTLALPSLTEITVYVIQLRKACSHPYLFPGIEPEPYEEGEHLVQYFLELRKYSYARLDGSIRAEERFAAIRSFSGPSANSVLNSESDQSGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCIKLVTERTAEEVIMRRAEKKLLLSLNVIDENIQEHEEEQKSGVGTGDLKSIIFGLHMFDPNENNDGERGNMELSEINAMTDKVIAMRGVHISDKDDRKFEINPRNLLESYDAKEGASTSFNSDPSLDEASYLSWVKKL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1258 572 CDD SF2_C_SNF 332 438 - -
Mibi04g1258 572 SMART helicmild6 331 427 IPR001650 -
Mibi04g1258 572 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 477 IPR001650 -
Mibi04g1258 572 Pfam SNF2-related domain 75 311 IPR000330 GO:0005524|GO:0140658
Mibi04g1258 572 Gene3D - 67 297 IPR038718 -
Mibi04g1258 572 Gene3D - 332 524 IPR027417 -
Mibi04g1258 572 SMART ultradead3 46 246 IPR014001 -
Mibi04g1258 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 283 IPR027417 -
Mibi04g1258 572 Pfam Helicase conserved C-terminal domain 334 427 IPR001650 -
Mibi04g1258 572 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 306 335 IPR031053 GO:0003678|GO:0006281|GO:0006338
Mibi04g1258 572 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 238 IPR014001 -
Mibi04g1258 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 473 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1258 Mibi-ChrMibi04 31045913 31055556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1258 333 486 RAD5 or RAD16-like Gene Family AT5G05130 27.922 2.33e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi04g1258 SNF2_N 1.8e-43 CL0023