Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1253 ATGCCGAGAACTGCACTTTCTTCTTCCTCTTCTTCTTGTTTTTCTTCTTGTTTCTCACTTTGTGGTGGTTTTTGGCAGGTGGTGTCATTTTTTTTTTGGGAGGTAGAAACGGCGTCGTCTTGGTGGAACACCTCTGGGGGAGGAGGAGAAGGAGAAGAAAAGGAGAGAGAAACTAACATGTTAGGATACGAATGGGGAAACCCTCCTTCGTCCACCATGGTCCTCGCCGTGGCCACCAACAGCGAAGAAACTCCGGTTACCACCGGCAGTGTAGACGACTCCCACCACCGCCAAATCTTCGACCACTACACTTCCCATTCCTTCCTTCCCGACCACCTCCTCCACCACCACCACCACCACCACCACCACCAAACTCCGCCGCCACATGTCCCCTCCTCCGCCGCCGCCGCCGACTTCCCCCACTACCCATTCAACAACCCTCACAACCACCATAACAACATCCAGCACTCCTTTTTTGACCCACGCGCCTTCCCCGGCGCGTCGTCATCCACGTACCCTCCACCGCAACCACCTCCTCCTCCGATGCTTTCGCTCGAACCGCTTCCGGGTGGGCCCGGGGGGTTCCTGATGGTTCCGAAGTCGGAAGAAATCGGTCGCTCCAGCGAATTCACGGCGGCGATGGCTACGGGGTCGAGAATTGGGCTCAACCTTGGTGGTCGGACTTATTTCTCGTCATCGTCGGAGGATGATTTTGTGAGCCGGCTTTACCGCCGGTCTAGGCCGGGGGCTGAACCGGGTTCGATGATGATGGCGGCGGCGGCTTCGGCGATATCGAACTCGCCTCGGTGTCAGGCTGAGGGTTGTAATGCTGATCTGTCACATGCGAAGCATTACCACCGAAGGCATAAGGTTTGTGAGTTTCATTCTAAAGCGGCCACCGTCATCGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGTAGCAGGTTCCATCTTCTTTCTGAGTTTGACAATGGGAAACGAAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGCAGAAGAAAAACCCAGCAGCCAAATCAAGAAATCCTGAAAACCCAGATCGACAATTCAAGAAATTCTACTTTTGAAACTGTTACAAGATCTCCACCGGACTCCGGAGGAGCTCAGGCGATGTCGTCGGTGACGGTGGCGGTGTCTCCACCGGATTATTTCCGGCAAACGGCATACCAGAATCAGAGGGCAAGTCCATCGGCAACATCAAGCTCATTGTTCTTCTCAAGTGGGTAG 1254 0.5463 MPRTALSSSSSSCFSSCFSLCGGFWQVVSFFFWEVETASSWWNTSGGGGEGEEKERETNMLGYEWGNPPSSTMVLAVATNSEETPVTTGSVDDSHHRQIFDHYTSHSFLPDHLLHHHHHHHHHQTPPPHVPSSAAAADFPHYPFNNPHNHHNNIQHSFFDPRAFPGASSSTYPPPQPPPPPMLSLEPLPGGPGGFLMVPKSEEIGRSSEFTAAMATGSRIGLNLGGRTYFSSSSEDDFVSRLYRRSRPGAEPGSMMMAAAASAISNSPRCQAEGCNADLSHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPNQEILKTQIDNSRNSTFETVTRSPPDSGGAQAMSSVTVAVSPPDYFRQTAYQNQRASPSATSSSLFFSSG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1253 417 Gene3D - 261 331 IPR036893 GO:0003677|GO:0005634
Mibi04g1253 417 Pfam SBP domain 270 343 IPR004333 GO:0003677
Mibi04g1253 417 MobiDBLite consensus disorder prediction 348 383 - -
Mibi04g1253 417 SUPERFAMILY SBT domain 268 347 IPR036893 GO:0003677|GO:0005634
Mibi04g1253 417 MobiDBLite consensus disorder prediction 397 417 - -
Mibi04g1253 417 MobiDBLite consensus disorder prediction 168 187 - -
Mibi04g1253 417 ProSiteProfiles Zinc finger SBP-type profile. 267 344 IPR004333 GO:0003677
Mibi04g1253 417 FunFam Squamosa promoter-binding-like protein 14 261 331 - -
Mibi04g1253 417 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 170 406 IPR044817 GO:0003677
Mibi04g1253 417 MobiDBLite consensus disorder prediction 115 136 - -
Mibi04g1253 417 MobiDBLite consensus disorder prediction 337 383 - -
Mibi04g1253 417 MobiDBLite consensus disorder prediction 156 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1253 Mibi-ChrMibi04 30928439 30931457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1253 60 317 SBP-box Gene Family AT1G02065 43.015 1.91e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mibi04g1253 SBP 1.4e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g1253 04 30928439 30931457 Mibi04g1253 04 30928439 30931457 ECH