Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1248 ATGGATGACCGTATTCCAGTGCCAGATGAGATAGACATTCCATACGGCATTTTAGTGAAAGATGAGATGGGCATTCGAGTAACAGATAAGATGATAGCGGAGGATTTTTCAACTGCACAATACGGCATGTCGTTTAGCGGAACAGCTGGTCAAGTCAATAGATCCAAAATATTAGCTAGTGGGAAAACGAGACTCAAAACAGAGTCAAACGAACGGCGTTCTTCTTCATCTTCCGGGGAGGGATCATGTGTGCGCAAGTGCACACATTGTGGGGTAGGGAAAACCCCACAATGGCGAAGCGGACCAAAGGGACCCAAGACTCTGTGTAATGCGTGTGGGGTGAGATACAAATCGGGTCGGTTATTACCCGAATACCGACCCGCTTTGAGTCCAACAAGCGTGCTGGATCGACACTCGAACTCGCATCGGAAGGTGTTGGAGCTCCGGAGGCAGAAGGAGGTGAAGATGATTGTGAAGCAAGAAGTAGAGTAA 492 0.4837 MDDRIPVPDEIDIPYGILVKDEMGIRVTDKMIAEDFSTAQYGMSFSGTAGQVNRSKILASGKTRLKTESNERRSSSSSGEGSCVRKCTHCGVGKTPQWRSGPKGPKTLCNACGVRYKSGRLLPEYRPALSPTSVLDRHSNSHRKVLELRRQKEVKMIVKQEVE 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1248 163 Gene3D - 83 159 IPR013088 GO:0006355|GO:0008270
Mibi04g1248 163 PANTHER GATA TRANSCRIPTION FACTOR 47 153 - -
Mibi04g1248 163 CDD ZnF_GATA 86 128 IPR000679 GO:0006355|GO:0043565
Mibi04g1248 163 ProSitePatterns GATA-type zinc finger domain. 87 112 IPR000679 GO:0006355|GO:0043565
Mibi04g1248 163 ProSiteProfiles GATA-type zinc finger domain profile. 85 117 IPR000679 GO:0006355|GO:0043565
Mibi04g1248 163 SMART GATA_3 81 131 IPR000679 GO:0006355|GO:0043565
Mibi04g1248 163 MobiDBLite consensus disorder prediction 56 84 - -
Mibi04g1248 163 FunFam GATA transcription factor 76 162 - -
Mibi04g1248 163 Pfam GATA zinc finger 87 121 IPR000679 GO:0006355|GO:0043565
Mibi04g1248 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 83 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1248 Mibi-ChrMibi04 30642405 30642896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1248 71 163 C2C2-Gata Transcription Factor Family AT2G45050 69.892 3.65e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi04g1248 GATA 9.6e-17 CL0167