Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1217 ATGGCTCTTTTCACTCCTCAACTTCCATTAGTCTTCCAATTCTTCAATCCTCTAGTGGCTTTCTTTTCATTGTTTCTCATAGTGAGCGGTTCCTCTTGCTCCAATAACCCTAGAAAGTTTCTTAATTCTTCTTCATCGTACATTTCTGATTCCGATTGGTCTCCGGCAGATGCTACATGGTACGGAAGCCCTAACGGTGACGGAAGCGAAGGTGGTGCTTGCGGATATACTAGTACTGTAGGGCAACCTCCATTTTCTTCGATGATATCAGCAGGAGGCTCACCTATATATAAATCAGGCCAAGGCTGTGGAGATTGCTTTGAGGTGAAATGCACGTCAAATAATGCATGTTCAGGTAACCCAGTGACTGTTGTGATCACTGATGAGTGTCCTGGGTGTGGTTCTGCTCAGAGATTTCATTTTGATTTGAGTGGTACTGCTTTTGGTGCCATGGCTGTTTCTGGTCAAGCAGATCAACTACGCAATGCCGGCAAGTTGGATATTCAATATAGAAGTGTTAAATGCAACTTCCCAGGTACAACCATAGCATTCAAAGTGGATTCAGGATCAAACCCATATTATTTTGCCGTTGTGATAGAATATGAGAATGGAAATGGCATTGCTAACGTTGAACTCAAGGAATCCCAAGGCTCAGCTTCATGGCGTCCAATGCAACAATCCTGGGGTGCTGTTTGGAAGCTTAACTCTGGCTCACCACTTGAGCCACCATTTTCCGTCCGGCTAACCGCACCGGAGTCTATGAATACCGTAGAGGCAAGCAATGTGATCCCACCAGGGTGGAGTCCTGGTCAGACTTATCGATCTGTGGTCAACTTCCACTAA 843 0.4531 MALFTPQLPLVFQFFNPLVAFFSLFLIVSGSSCSNNPRKFLNSSSSYISDSDWSPADATWYGSPNGDGSEGGACGYTSTVGQPPFSSMISAGGSPIYKSGQGCGDCFEVKCTSNNACSGNPVTVVITDECPGCGSAQRFHFDLSGTAFGAMAVSGQADQLRNAGKLDIQYRSVKCNFPGTTIAFKVDSGSNPYYFAVVIEYENGNGIANVELKESQGSASWRPMQQSWGAVWKLNSGSPLEPPFSVRLTAPESMNTVEASNVIPPGWSPGQTYRSVVNFH 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1217 280 SMART dpbb_1 89 170 IPR007112 -
Mibi04g1217 280 SUPERFAMILY Barwin-like endoglucanases 46 179 IPR036908 -
Mibi04g1217 280 Gene3D - 177 280 IPR036749 -
Mibi04g1217 280 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 275 IPR007117 -
Mibi04g1217 280 Pfam Expansin C-terminal domain 182 264 IPR007117 -
Mibi04g1217 280 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Mibi04g1217 280 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Mibi04g1217 280 PRINTS Expansin/Lol pI family signature 163 179 IPR007118 GO:0005576
Mibi04g1217 280 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Mibi04g1217 280 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Mibi04g1217 280 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Mibi04g1217 280 PANTHER EXPANSIN-B3 27 279 - -
Mibi04g1217 280 SUPERFAMILY PHL pollen allergen 180 275 IPR036749 -
Mibi04g1217 280 PRINTS Major pollen allergen Lol pI signature 230 247 IPR005795 GO:0005576|GO:0019953
Mibi04g1217 280 PRINTS Major pollen allergen Lol pI signature 91 102 IPR005795 GO:0005576|GO:0019953
Mibi04g1217 280 PRINTS Major pollen allergen Lol pI signature 111 121 IPR005795 GO:0005576|GO:0019953
Mibi04g1217 280 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Mibi04g1217 280 PRINTS Major pollen allergen Lol pI signature 152 167 IPR005795 GO:0005576|GO:0019953
Mibi04g1217 280 Pfam Lytic transglycolase 90 170 IPR009009 -
Mibi04g1217 280 Gene3D - 38 176 IPR036908 -
Mibi04g1217 280 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 180 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1217 Mibi-ChrMibi04 29180106 29182470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1217 37 279 Expansin Gene Family AT1G65680 61.066 5.60e-105 305