Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1216 ATGTTCTTCCTTAAAATGAGTTCCTCATTGTTCAACCCTAGAATGTTTCTCAATTCTTCATACCCCACTGATTCAGGGTGGTCTTCAGCAGATGCTACGTGGTATGGAAGCCCTTACGGTGCTGGAAGTGATGGGGGTGCTTGTGGATATGGCAGTGATGTAGAAAAAACCCCGTTTTCTTCTATGATAGCAGCCGGAGGGCCACCAATATATAACTCAGGCAATGGATGTGGATCTTGTTATCAGGTGAAGTGCACATCAAATCCAGCGTGTTCAGGGGATCCTGTGAGCATAGTTATCACTGATGAATGTGATGGATGTGGCTCTGCACAAAGATTTCACTTTGATTTGAGTGGCACAGCTTTTGGTGCTATGGCTATTTCTGGCCAAGCTGATCAGCTACGAAATAATGTTGGCAAGCTTGAAATTCAATATAAAAGAGTCCAATGTAACTATCCAGGAAAATCAATAGCGTTTAAAGTGGACACAGGATCAAACCAATACTATTTTTCTGTGTTGATAGAATATGTAAGTGGAGATGGTGATCTTTCACTTGTTGAGCTGAAGCAGGCTAACTCTGCACAATGGCAAGCCATGCAATTAAATTCAGGAGCAACGTGGAAGCTTAACTCTGCCGTACCACTCCAAGCCCCATTCTCCATAAGGCTAACCACTTTCAAGTCAAAGAAGACACTTGAAGCCATCAACGTGATTCAAAGTGGTTGGAGTCCAGGCCAAATTTATCAATCATCTGTGAACTTCTGA 765 0.4288 MFFLKMSSSLFNPRMFLNSSYPTDSGWSSADATWYGSPYGAGSDGGACGYGSDVEKTPFSSMIAAGGPPIYNSGNGCGSCYQVKCTSNPACSGDPVSIVITDECDGCGSAQRFHFDLSGTAFGAMAISGQADQLRNNVGKLEIQYKRVQCNYPGKSIAFKVDTGSNQYYFSVLIEYVSGDGDLSLVELKQANSAQWQAMQLNSGATWKLNSAVPLQAPFSIRLTTFKSKKTLEAINVIQSGWSPGQIYQSSVNF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1216 254 Gene3D - 152 254 IPR036749 -
Mibi04g1216 254 PRINTS Major pollen allergen Lol pI signature 65 76 IPR005795 GO:0005576|GO:0019953
Mibi04g1216 254 PRINTS Major pollen allergen Lol pI signature 85 95 IPR005795 GO:0005576|GO:0019953
Mibi04g1216 254 PRINTS Major pollen allergen Lol pI signature 205 222 IPR005795 GO:0005576|GO:0019953
Mibi04g1216 254 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Mibi04g1216 254 PRINTS Major pollen allergen Lol pI signature 159 174 IPR005795 GO:0005576|GO:0019953
Mibi04g1216 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 250 IPR007117 -
Mibi04g1216 254 Pfam Expansin C-terminal domain 157 238 IPR007117 -
Mibi04g1216 254 Gene3D - 14 151 IPR036908 -
Mibi04g1216 254 Coils Coil 131 151 - -
Mibi04g1216 254 PANTHER EXPANSIN-B3 17 254 - -
Mibi04g1216 254 SUPERFAMILY Barwin-like endoglucanases 17 154 IPR036908 -
Mibi04g1216 254 Pfam Lytic transglycolase 64 142 IPR009009 -
Mibi04g1216 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 155 IPR007112 -
Mibi04g1216 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Mibi04g1216 254 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Mibi04g1216 254 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Mibi04g1216 254 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Mibi04g1216 254 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Mibi04g1216 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Mibi04g1216 254 SUPERFAMILY PHL pollen allergen 155 250 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1216 Mibi-ChrMibi04 29161052 29164270 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1216 11 254 Expansin Gene Family AT1G65680 57.724 1.06e-100 293