Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1212 ATGGCTTTGACCGTAGATCAGCAACAACCAAACTTAAAGTATTTCTGTAAGATCTGCAAGAAAGGCTTCGGTTGTGGTAGAGCGCTTGGTGGACATATGAGAGCTCATGGCATCGGTGATGACAGCTGGAACCTCGACGACGACGAGGACGCCGCCAGCGACTGGGACGAAAAGACCGCCACCGGAACCGGCGGAAATGACCGGCCGCGCACTAAGCGATTTTATGCCCTAAGAACAAACCCTAACAGGTCAAAGAGTTGTAGGGTTTGTGAAAATTGCGGTAAAGAATTTTCTTCATGGGATTCTTTTCTTGAACATGGAAAGTGCACTTCTTCCAATGACCGCCACGTCATTCAGTCGTCGCCGGTTTCTTCCCAGATGTCCGATGATGACGGCGAAGGCGACGGCGAGAGAGGTTGTGGTTGGTCTAAAAGGAAGAGATCATTCAGAGCCAAAGTAGGTATGTTAAATTCTTCAAGTGAAGATGTTGACATTGCAGCCAACTGTCTTGTGATGTTATCAAATGCCAAATTCGATCCTCGAAACTCCGCCACGGAGGAATCGAGTGCGTCGCCGAGCAGAGAAGAGGAGAGAAGAAGCCCTATCAACTTCATCCCACCGCTATCTTATTGTGTTCCTGCTGTAGTGGATCACAAAGCCAAAAGTGCAGTGACTTCTAAAGGCTTGTTTGAATGCAAAGCATGTAAGAAAACATTCAATTCTCATCAAGCGTTAGGTGGCCATAGGGCAAGTCATAAGAAAGTTAAAGGCTGCTTCGCTTCGAGACTCGACAACGTCGAAGATAAAGATCACGATGATGTCTTAAATCATGAAGAGTTTCTCCCCACAAAATCAAGCTCAATCTCTCATCATCCTTCTTCAAGCAATGCCTCGTTATTTATGGTGTCTTCTTCGAAAAGGAAATCCAAAGTTCACGAATGTTCGATATGTCATCGGACTTTTTCATCGGGACAAGCCTTAGGAGGACACAAGAGGTGTCATTGGATCACACCAAATGTACCAGATTCGTCCACATTCGCTAGGTTTCAACAGTTTCAAGATCATATAGAGAGAATGAATCAAATCCCTAAATTTGATAATTCGGAGCCACTAGATCTAAAGCTTGATCTCAACCTTCCGGCTGCTCCTGAGAATAGTCAGGCAAGGCGGAATTTGGCGACGGAAATTTTCTTGCAACCATGGTTAGGAGGAACAATGGAGAAGGATAAAAGTAGGAACAACAACAATACTAATAGTCAATGCCACAGCCCCAGCAACAGGGAATTACAACACAATGGAACTGAAAAGGACAACAAGGATGGTGACAAAAATAGCAAGAAAAACAGCACGATAATGTCGATGGAAAATGTTGAAGATGAAGCTGATAGTAAAGTGAAGAAGTTAGCGAAACTAAGTGAGCTAAAGGACATGAATATAGGTGGAAGTTCTTCCCCATGGTTGCAGGTGGGGATTGGTTCAACCACTGGTGTGGGAGCCGAACCATAA 1506 0.4482 MALTVDQQQPNLKYFCKICKKGFGCGRALGGHMRAHGIGDDSWNLDDDEDAASDWDEKTATGTGGNDRPRTKRFYALRTNPNRSKSCRVCENCGKEFSSWDSFLEHGKCTSSNDRHVIQSSPVSSQMSDDDGEGDGERGCGWSKRKRSFRAKVGMLNSSSEDVDIAANCLVMLSNAKFDPRNSATEESSASPSREEERRSPINFIPPLSYCVPAVVDHKAKSAVTSKGLFECKACKKTFNSHQALGGHRASHKKVKGCFASRLDNVEDKDHDDVLNHEEFLPTKSSSISHHPSSSNASLFMVSSSKRKSKVHECSICHRTFSSGQALGGHKRCHWITPNVPDSSTFARFQQFQDHIERMNQIPKFDNSEPLDLKLDLNLPAAPENSQARRNLATEIFLQPWLGGTMEKDKSRNNNNTNSQCHSPSNRELQHNGTEKDNKDGDKNSKKNSTIMSMENVEDEADSKVKKLAKLSELKDMNIGGSSSPWLQVGIGSTTGVGAEP 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1212 501 MobiDBLite consensus disorder prediction 114 141 - -
Mibi04g1212 501 MobiDBLite consensus disorder prediction 408 428 - -
Mibi04g1212 501 MobiDBLite consensus disorder prediction 403 464 - -
Mibi04g1212 501 ProSitePatterns Zinc finger C2H2 type domain signature. 314 334 IPR013087 -
Mibi04g1212 501 MobiDBLite consensus disorder prediction 49 71 - -
Mibi04g1212 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 312 334 IPR013087 -
Mibi04g1212 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 116 IPR013087 -
Mibi04g1212 501 MobiDBLite consensus disorder prediction 180 199 - -
Mibi04g1212 501 SUPERFAMILY beta-beta-alpha zinc fingers 309 335 IPR036236 -
Mibi04g1212 501 SUPERFAMILY beta-beta-alpha zinc fingers 14 107 IPR036236 -
Mibi04g1212 501 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Mibi04g1212 501 SMART c2h2final6 312 334 IPR013087 -
Mibi04g1212 501 SMART c2h2final6 88 116 IPR013087 -
Mibi04g1212 501 SMART c2h2final6 230 252 IPR013087 -
Mibi04g1212 501 SMART c2h2final6 14 36 IPR013087 -
Mibi04g1212 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 36 IPR013087 -
Mibi04g1212 501 MobiDBLite consensus disorder prediction 477 501 - -
Mibi04g1212 501 MobiDBLite consensus disorder prediction 477 491 - -
Mibi04g1212 501 Pfam C2H2-type zinc finger 14 36 - -
Mibi04g1212 501 Pfam C2H2-type zinc finger 230 254 - -
Mibi04g1212 501 Pfam C2H2-type zinc finger 311 336 - -
Mibi04g1212 501 Coils Coil 454 474 - -
Mibi04g1212 501 SUPERFAMILY beta-beta-alpha zinc fingers 226 256 IPR036236 -
Mibi04g1212 501 MobiDBLite consensus disorder prediction 429 446 - -
Mibi04g1212 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 257 IPR013087 -
Mibi04g1212 501 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Mibi04g1212 501 MobiDBLite consensus disorder prediction 114 128 - -
Mibi04g1212 501 PANTHER OS02G0659100 PROTEIN 5 495 - -
Mibi04g1212 501 Gene3D Classic Zinc Finger 11 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1212 Mibi-ChrMibi04 28981658 28983163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1212 144 419 C2H2 Transcription Factor Family AT1G02040 34.657 9.61e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi04g1212 zf-C2H2_6 2.2e-12 CL0361