Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1211 ATGGAGAAACACAAGTGCAAGCTCTGCTTAAGAAACTTCCCTAATGGCAGAGCTTTGGGAGGTCACATGAGATCTCACATGGTGAACCTTAAACCAGAGGAGCCACCACCACCACCGCCATTAGTCCAACTTAGCTTCGAAGCCGACGAGTCTTCTCCGTCGTCGTTTTCATCGGGAGAAGAAGATGATGATGATGATGATAAAGCTCTTAGCTATGGCCTCAGAGAAAACCCAAAGAGAAGCTTTCGGCTTGTGGATCCTGAATTCTCCTTCCCCATTGAATCCAACTCTGTAATCCTCCAAGACAGAGAAAGCGAAACTGAATCATCCATGAATCCAACTCGCACAGGATCCAAAAGGGCATTTACTAATAATAACATCCAATTCCATCGTCACCATCAGAAGAAGAAGATGAAATCCAGTAATGATTTTCATCATCATCATCGTCATCATCATCATCATAAGAATAAGACAGAGTCTTCTTGTATTCAGGCTGAACCGGTGAGTTCGATCTCTGACGGTACCACAGACGAAGATGTCGCATTTTGGCTTATTATGTTGTCTAGGGACCAATGGAAGAGACAAGAGGAAGAAGATGAAGATGAGGAAGAAGAGGAAGAAGAAGAGGACGAGGAAGATGAGAGATCTGTGGAAGATTCTGATGAATTCTATGAGGAGATGAAATCATCAAAGACGAAATCAGTTCGTGGTGGAAGGTACAAATGTGAGACGTGTAACAAAGTTTTTCGATCATATCAAGCATTGGGAGGTCACAGGGCAAGTCACAAGAAAATGAAAGCGGCATCTACATATGAACCAGAAATTGATAATGCTACAGCGGTTGCAGAGAAGAAAATCCATGAATGTCCAGTTTGTTTGAGGGTGTTTGCTTCAGGTCAAGCTCTTGGGGGACACAAGAGAACGCACGTGACAGGTTCTTCTGCAACTTCTTCGGTTGTTCGAAGTAGTAATACTCCGTTAACAACGATCAAGATGGAAGATAACAATAATAAGAACAATAGTTTGATAGATCTTAACCTTCCTGCTCCAGTTGATGACGATGAGATCAGCCAAATTGAGAATTCTGCTGTTTCTGATGCAGAATTCCTCAAACCCAGTTCACAATTCATTGAGGCACGAGTATAG 1146 0.4267 MEKHKCKLCLRNFPNGRALGGHMRSHMVNLKPEEPPPPPPLVQLSFEADESSPSSFSSGEEDDDDDDKALSYGLRENPKRSFRLVDPEFSFPIESNSVILQDRESETESSMNPTRTGSKRAFTNNNIQFHRHHQKKKMKSSNDFHHHHRHHHHHKNKTESSCIQAEPVSSISDGTTDEDVAFWLIMLSRDQWKRQEEEDEDEEEEEEEEDEEDERSVEDSDEFYEEMKSSKTKSVRGGRYKCETCNKVFRSYQALGGHRASHKKMKAASTYEPEIDNATAVAEKKIHECPVCLRVFASGQALGGHKRTHVTGSSATSSVVRSSNTPLTTIKMEDNNNKNNSLIDLNLPAPVDDDEISQIENSAVSDAEFLKPSSQFIEARV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1211 381 MobiDBLite consensus disorder prediction 136 174 - -
Mibi04g1211 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Mibi04g1211 381 MobiDBLite consensus disorder prediction 101 120 - -
Mibi04g1211 381 Coils Coil 189 215 - -
Mibi04g1211 381 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 372 IPR044303 GO:0006355
Mibi04g1211 381 MobiDBLite consensus disorder prediction 27 74 - -
Mibi04g1211 381 ProSitePatterns Zinc finger C2H2 type domain signature. 289 309 IPR013087 -
Mibi04g1211 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 287 314 IPR013087 -
Mibi04g1211 381 SMART c2h2final6 4 26 IPR013087 -
Mibi04g1211 381 SMART c2h2final6 287 309 IPR013087 -
Mibi04g1211 381 SMART c2h2final6 240 262 IPR013087 -
Mibi04g1211 381 Pfam C2H2-type zinc finger 239 264 - -
Mibi04g1211 381 Pfam C2H2-type zinc finger 4 27 - -
Mibi04g1211 381 Pfam C2H2-type zinc finger 287 309 - -
Mibi04g1211 381 MobiDBLite consensus disorder prediction 196 220 - -
Mibi04g1211 381 MobiDBLite consensus disorder prediction 136 157 - -
Mibi04g1211 381 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Mibi04g1211 381 Gene3D Classic Zinc Finger 238 309 - -
Mibi04g1211 381 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Mibi04g1211 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Mibi04g1211 381 SUPERFAMILY beta-beta-alpha zinc fingers 239 309 IPR036236 -
Mibi04g1211 381 MobiDBLite consensus disorder prediction 193 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1211 Mibi-ChrMibi04 28921863 28923008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1211 1 359 C2H2 Transcription Factor Family AT3G60580 40.054 5.31e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi04g1211 zf-C2H2_6 1.4e-11 CL0361