Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1189 ATGAAACGGGAAGTGCAGTTAGAGCCTCCAGTTCCACAAAACCTTGGGGATTCCGACCCTTTACTTGAGAATCAGGATGAGGACGAGGGGGATGATGAAGAGCGAAAGGAAGTGGAATGCCCAGGAGGCATGAGTGAGATTAAGAGCGAAGATGTCGAGGCTGGCTCACTTCCTTCTTGTCGAATTTGTCTGGAAAGCGATTCTGACCCAGGTGATGAATTGATATCACCATGCATGTGCAAGGGGACCCAACAGTTTGTTCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTCTCACACTGCACCACGTGCAAAGCTCAATTTCATCTTCGAGTTGAATTGTTTGAGGACAACTCCTGGCGTAAAATAAAGTTCAGGCTTTTTGTGGCAAGGGATGTTTTCCTTGTATTCTTAGTTGTACAAACTGTGATTGCGGCAATGGGTGCTTTTGCATACCTCATGGACAAAGATGGAGCATTCAGGAACTCTTTCGATGATGGTTGGGATAAGATACTGTCAAACCATCCTATACCATTTTATTACACTATTGGAGTGCTAGCCTTCTTTGTGCTGCTTGGATTTTTTGGTCTCATTTTACATTGTTCCTCTCTCAATGCCAATGATTCGCGAATGGCTGGTTGTCAGAACTGTTGCTATGGATGGGGCATTTTGGATTGCTTTCCTGCATCAATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTTGTTGTCATCTTTGCAATTTTGGGTATAGCTTATAGTTTCCTCGCAGCCACCATGGCGATTCAAAGAATTTGGCAGAGGCACTACCATATACTAACTAAGAGGGAGCTAACTAAGGAATATGTTGTGGAGGACCTCCAAGGCTCTTATTCCCCTCCAAAGTTGGACCCAGAGCATGAAGAGCGCTTGAAAATGCTCAAGCTTTTGTGA 948 0.4494 MKREVQLEPPVPQNLGDSDPLLENQDEDEGDDEERKEVECPGGMSEIKSEDVEAGSLPSCRICLESDSDPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLVVQTVIAAMGAFAYLMDKDGAFRNSFDDGWDKILSNHPIPFYYTIGVLAFFVLLGFFGLILHCSSLNANDSRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYSFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLQGSYSPPKLDPEHEERLKMLKLL 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1189 315 SUPERFAMILY RING/U-box 58 115 - -
Mibi04g1189 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 124 IPR013083 -
Mibi04g1189 315 MobiDBLite consensus disorder prediction 1 46 - -
Mibi04g1189 315 Pfam RING-variant domain 60 110 IPR011016 GO:0008270
Mibi04g1189 315 CDD RING_CH-C4HC3_MARCH 60 111 - -
Mibi04g1189 315 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 315 - -
Mibi04g1189 315 SMART ringv_2 59 111 IPR011016 GO:0008270
Mibi04g1189 315 MobiDBLite consensus disorder prediction 21 35 - -
Mibi04g1189 315 ProSiteProfiles Zinc finger RING-CH-type profile. 52 117 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1189 Mibi-ChrMibi04 27630385 27633551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1189 1 315 C3H Transcription Factor Family AT1G11020 76.324 2.84e-166 463