Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1179 ATGTCACCGATAAATCATTCGAAATCCTTGTTTCAAGCCTTTGGGATGATGTCATCACCAAGCAATAAGGGTCTATCACATCCTATGTTAGATGCAAGACCAAGCACATCTCAATCATCATGTAGAGAAATTCATAATTTGATTGGTTTCCATGAGCAAGTTCACATGAACACATCAGAAACCTCCATGGGGTCTGTAACTATTCGTATTGGTGGGTTCTCCAAAGTTATCGATACACTTTTACAGAGTATTTCACAGGGATGTAGTGAAAGAGGACTTTATGGCAATTCTCTTCCTGGAGACAATTATCCTTATTGGCTAAATTTCAAAGGTGAAGGACATTCAATATTAATTGAAGTGCCTCACATCATTGGAAGAAGCTTGAAAGGATTGATTCTATGCATTATATGTTTGTCTTCCCAAGACAACATGACAACTGTGTATCCTATTGATGTCTTGATATCGAATCAAACAAAGGATACCATTGAATTCTACAAGATAGATGCAGTTACGAGTTCAAAGGATGATGAGTGGCAAGACATAATTTCTAACTTGGAGCCTGGTAACAAAGTGCAAGTTGTGGATTGTTTTGATAGAGCTGCAAAGATTGTTAAACAAGTGTATTCTATTCATCCTGTGTATGACGATATAATTCCTGCATTGCTTAGTGGTGGCGTATGGAATCTTCCAGAGAAATGCAACTTTACTCTTGGTGTTCCAGTTGGACCTATGATATCTAAAGCAACTAAGGGTGTATCTGAAGTTCTGAATGAATTTCAGGATGTAGAATTCACTTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATGATGGATCAGTTAAGATTTACAGTAGAAATGCTGAACGAAATACTGAAAAGTTTCCTGATGTTGCTGCTGCTATTTCAAGGTTAAAGAAATCGTCAGTATCAACATTGGTTCTTGATTGTGAACTTGTTGCATATGACCGAGAGAAAAAGAAAATTCTTCCATTTCAGGTATGA 1017 0.3717 MSPINHSKSLFQAFGMMSSPSNKGLSHPMLDARPSTSQSSCREIHNLIGFHEQVHMNTSETSMGSVTIRIGGFSKVIDTLLQSISQGCSERGLYGNSLPGDNYPYWLNFKGEGHSILIEVPHIIGRSLKGLILCIICLSSQDNMTTVYPIDVLISNQTKDTIEFYKIDAVTSSKDDEWQDIISNLEPGNKVQVVDCFDRAAKIVKQVYSIHPVYDDIIPALLSGGVWNLPEKCNFTLGVPVGPMISKATKGVSEVLNEFQDVEFTCEYKYDGERAQIHYMDDGSVKIYSRNAERNTEKFPDVAAAISRLKKSSVSTLVLDCELVAYDREKKKILPFQV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1179 338 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 235 337 - -
Mibi04g1179 338 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 267 275 IPR016059 GO:0003909
Mibi04g1179 338 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 181 234 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi04g1179 338 Gene3D DNA ligase/mRNA capping enzyme 272 338 - -
Mibi04g1179 338 Gene3D - 154 245 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi04g1179 338 Gene3D - 253 271 - -
Mibi04g1179 338 Pfam ATP dependent DNA ligase domain 243 337 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mibi04g1179 338 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 190 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1179 Mibi-ChrMibi04 27184536 27191203 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1179 197 338 Core DNA Replication Machinery Family AT1G08130 73.944 4.24e-74 242