Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1178 ATGGCTGCAAAGATTGTCAAACAAGTCTATTCTGTTCATCCAGTGTATGGCGATATAATTCCTGCATTGCTTAGTGGTGGTGTATGGAAACTTCCAGAGTCATGTAACATTAGTCCCGGTGTTCCAGTTGGACCTATGTTGTCTAAAGCAACTAAGGGTGTATCTGAAGTTCTAAATAAGTTCCAGGATGTAGAATTTACTTGTGAATACAAATATGATGGAGTGCGTGCCCAGATACATTACATAGATAATGTACCAGTTAAGATTTACAGTAGAAACGCTGAACGAAATACTGAAAAGTTTCCTGATGTTACTGCTGCTATTTCAAGGTTAAGGAAATCTTCAGTATCATCATTTGTTCTTAGTACTCGACCTCAGAAAAGAGTTACTATGAGTGATATAAAAGTCAATATACTTGAACTATGGAATCCTTGTTACAATTGTTTGGATTACTTAACCTTTACTGAAGCTGCTCCCCTGTTTAAGGCAATGAAAAGTTTGACTGAGAATTATAAGGCTAGCACTCGGTATGGAATATTCAAAATGGGAATCATCTCTATGCTTCTTTTGAGAGAAAACCTGGATTTCTTCAGTTTGCAAGAAGATGCTGCATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGAATATCTTGAGAACATTGGGGACTCTCTGGATTTGGTACCTATAGCTGCTTTTCATGGTCATGGGGAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACAATGATAATGAAGAATTTCAAAGCATTTGTAAAGTAGGCACGGGATTCTCAGAGGCAATGCTTGAAGAACGTTCTGCTAATCTTCGTTCCAATGTAATTCCTAAACCAAAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCACCGTGCTGCAGTAGGCATTGGAGATTCAGATAAGGTACAGAAAATGCTATGCTACAGGTATACTTTGGCGGAAGGTGCTCAGACGGCTACAGATACTTTCGCGGAAGGAATCAGAACTTTCATTGATGGAACGATCGAGTACTTTCCCGTACAACAGGTAATAGAGAAATCCAGAATAGTTGTGGTGGTTTTCACACCAGAATTCGTTGAGTCCGACATATGTCTCAAGAGACTGGTGAACATAATGTGGTGCCACAAAACTATGAACAAATTGGTGTTGACTGCGTTCTCTGGAGTGAGCCAGGAGCAAGTAATTACAGAGCTTGAAGATTTAGAACGGCGCAAATTAGCAGCTTGGGAATTGGAGTTCGATTTGGTTTCAAGAAGAGCCATAGCTGAAGCAGCTGCGATATCTGGCTTTTCAATCAGCTCGTGGATGTTAAGTCAGCGGGATGATTCCAATAAAGGAAGCCCTGTTATTTCTTTGCATTCGGATCAACTTTCAGATTTCGATGGCTTTACAAAGGAGCGGTTGGAGGAGCTGGAGAATTGGACTGTACCAGCCGCTAAAGCCAACAGCGAAGCTGATGATTCACAATCGGATATGGATACGATAATTTCAGAGTCTTCGTCGTATTCGGATCTCATTTTGGCTTCTTCTGTTGATATGAGGTAA 1599 0.4115 MAAKIVKQVYSVHPVYGDIIPALLSGGVWKLPESCNISPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGVRAQIHYIDNVPVKIYSRNAERNTEKFPDVTAAISRLRKSSVSSFVLSTRPQKRVTMSDIKVNILELWNPCYNCLDYLTFTEAAPLFKAMKSLTENYKASTRYGIFKMGIISMLLLRENLDFFSLQEDAAYEPSKRSLNWLKLKKEYLENIGDSLDLVPIAAFHGHGERTGVYGAFLLACYDNDNEEFQSICKVGTGFSEAMLEERSANLRSNVIPKPKVWEVKAADLTISPVHRAAVGIGDSDKVQKMLCYRYTLAEGAQTATDTFAEGIRTFIDGTIEYFPVQQVIEKSRIVVVVFTPEFVESDICLKRLVNIMWCHKTMNKLVLTAFSGVSQEQVITELEDLERRKLAAWELEFDLVSRRAIAEAAAISGFSISSWMLSQRDDSNKGSPVISLHSDQLSDFDGFTKERLEELENWTVPAAKANSEADDSQSDMDTIISESSSYSDLILASSVDMR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1178 532 SUPERFAMILY Nucleic acid-binding proteins 226 315 IPR012340 -
Mibi04g1178 532 Gene3D DNA ligase/mRNA capping enzyme 45 124 - -
Mibi04g1178 532 ProSiteProfiles ATP-dependent DNA ligase family profile. 192 256 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mibi04g1178 532 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 38 224 - -
Mibi04g1178 532 Gene3D - 223 328 IPR012340 -
Mibi04g1178 532 Gene3D - 329 473 IPR035897 -
Mibi04g1178 532 SUPERFAMILY Toll/Interleukin receptor TIR domain 344 415 IPR035897 -
Mibi04g1178 532 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 202 318 - -
Mibi04g1178 532 Pfam TIR domain 357 412 IPR000157 GO:0007165
Mibi04g1178 532 Gene3D - 1 44 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mibi04g1178 532 Pfam ATP dependent DNA ligase C terminal region 243 296 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mibi04g1178 532 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 69 77 IPR016059 GO:0003909
Mibi04g1178 532 Pfam ATP dependent DNA ligase domain 45 121 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1178 Mibi-ChrMibi04 27165442 27171090 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1178 2 319 Core DNA Replication Machinery Family AT1G08130 53.209 1.21e-121 374