Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1161 ATGGGTGTGGTTCGTTCACTAAGTACGTTTGTTCTTCTACTTCTTCCCTTTCTGCTTTCCTATTATTGTGCATATGGCTACTCATTGAATGAATTGAAATCATGGTGTGGCCAAACTCCTAACCCTGATCAATGTGAGTACGACATGAGCACATCCAAAACTTACAATAAACCCATAAAGCAAAATTCAGATTTCTTCAAACTTTCAGTCGACCTTGCCCTTGAAAGAGCCCGACAGGGTCTAAATAAGACTCTCTCGCTTGGCCCTAAGTGTAGAAACGCACGTGAGAAAGCTGCTTGGGCTGATTGCATTGATCTCTATGAGTCAACCATCAACAGGATTTCAAAATCTACCAACGCAAAATGCACAAAAGTTGATGCTCAGACATGGCTCAGCACAGCCTTGACTGACCTCGAAACTTGCACTTTTGGGTTTTATGACCTTGGAGTTTCAAACTATGTGCTTCCATTGATGTCTAACAATGTTACTAAGTTGTTAAGTAACGCTCTGTCCATTAACAAGGCCCAATCACAAGCAACACCAAGTTTCAAAGATGGGTTTCCCGCCTGGGTTAAGACCCATGAACGAAAGCTGTTGCAGGCTACGAGTTCACCGGCATCTCAGGCGAATGTTGTGGTGGCCAAAGACGGGTCAGGGAAGTACACAACCTTGAAGGCTGCCGTAGATGCTGCACCAAAGAGTAATAAGGGAAGGTATATCATATATGTGAAGGCAGGAGTGTACAACGAACAAGTTGAGATAAAAGGAAGTAATATTATGTTGGTGGGAGATGGTATTGGAAAAACTATAATAACAGGTAGCAAAAGTGTTGGAGGAGGCACTACAACCTTCCGTTCAGCTACTGTTGCTGCTGTTGGAGATGGCTTTACTGCCCGAGACATGACATTAAGGAACACAGCTGGACCATCAAACCACCAAGCTGTGGCATTCAGATCAGGATCAGATCTCTCAGTGTTCTATCGATGCAGCTTTGAGGGATATCAAGACACACTCTATGTTCATTCACAAAGACAATTCTACAGAGAATGTGACATTTATGGCACAGTGGATTTCATCTTTGGTAACGCAGCTGTTGTTTTCCAAAACTGCAATCTGTATGCAAGAACACCTCCTCAAAAGACCATCACATTCACGGCTCAAGGTCGAACCGACCCGAATCAAAACACTGGCATTATCATTCACAATTCTAAGGTCACAGGTGCCTCAGACTTCAACTCCAACAACGTCAAGTCTTACCTTGGAAGGCCATGGAAGAAGTATTCAAGAACGGTATTCATGAAGTGTTCTCTTGATAGTTTGATTGATCCAGCAGGATGGTTGCCGTGGAGTGGTAATTTTGCTTTGGACACTTTGTATTATGCTGAGTATGCAAACACAGGATCTGGTTCTTCTACTTCAAATAGGGTTAAGTGGAAGGGTTACCATGTGATTGGTGCTTCCGAGGCCTCACAGTTTACTGTTGGTAATTTCCTTTCTGGGAATTCATGGTTACCTAACACTGGTGTGCCTTTCACTTCTGGTCTTTGA 1548 0.4335 MGVVRSLSTFVLLLLPFLLSYYCAYGYSLNELKSWCGQTPNPDQCEYDMSTSKTYNKPIKQNSDFFKLSVDLALERARQGLNKTLSLGPKCRNAREKAAWADCIDLYESTINRISKSTNAKCTKVDAQTWLSTALTDLETCTFGFYDLGVSNYVLPLMSNNVTKLLSNALSINKAQSQATPSFKDGFPAWVKTHERKLLQATSSPASQANVVVAKDGSGKYTTLKAAVDAAPKSNKGRYIIYVKAGVYNEQVEIKGSNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFTARDMTLRNTAGPSNHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARTPPQKTITFTAQGRTDPNQNTGIIIHNSKVTGASDFNSNNVKSYLGRPWKKYSRTVFMKCSLDSLIDPAGWLPWSGNFALDTLYYAEYANTGSGSSTSNRVKWKGYHVIGASEASQFTVGNFLSGNSWLPNTGVPFTSGL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1161 515 PANTHER PECTINESTERASE 18 505 - -
Mibi04g1161 515 SMART PMEI_2 27 172 IPR006501 GO:0004857
Mibi04g1161 515 Pfam Pectinesterase 210 501 IPR000070 GO:0030599|GO:0042545
Mibi04g1161 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 175 IPR035513 -
Mibi04g1161 515 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Mibi04g1161 515 SUPERFAMILY Pectin lyase-like 204 514 IPR011050 -
Mibi04g1161 515 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Mibi04g1161 515 CDD PMEI-like_3 34 175 - -
Mibi04g1161 515 Gene3D - 205 515 IPR012334 -
Mibi04g1161 515 FunFam Pectinesterase 204 515 - -
Mibi04g1161 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 174 IPR006501 GO:0004857
Mibi04g1161 515 Pfam Plant invertase/pectin methylesterase inhibitor 32 172 IPR006501 GO:0004857
Mibi04g1161 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 174 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1161 Mibi-ChrMibi04 25863590 25867129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1161 10 515 Carbohydrate Esterase AT2G45220 64.775 0.0 664