Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1135 ATGGCGGAGACAACCTCTCCCATGCTCATTGACGACGATGATAACAACTTCTCTTCCATGCCCGACAAGGGCAAAAGCGTGGCCGTTGCTGTTGCTGGCAATCCACCCAACAGCAAGGAAATTCCGTGGGTTGAAAAGTACCGCCCTAAATCTCTCGACGACGTCGCTGCACATCGCGACATTGTTGATACCATCGATAGGCTGACCTCTGAGAACAGATTACCCCATCTTTTACTGTACGGTCCTCCAGGCACGGGCAAAACATCAACGATTCTCGCTGTGGCCCGCAAACTATATGGAGCACAGTACCAACGCATGATTTTGGAGCTCAATGCATCAGATGACAGGGGAATTGATATCGTACGCCAACAGATACAAGATTTTGCTAGCTCCCAGATCCTCTCATTTGGAGTCAAGTTCTCTGTAAAGTTGGTCTTATTGGATGAGGCAGATGCGATGACAAAGGATGCACAATTTGCATTGCGTAGAGTGATTGAGAAATATACAAAAAGTACTAGGTTTGCGCTTATCTGTAATCATGTAAACAAGATTATTCCAGCACTGCAATCAAGATGCACTCGATTTCGGTTTGCCCCACTTGATGCTGTCCATATTACTGAGAGATTGGAGCATGTTGTTAAGGCTGAAGGGCTTGATGTTACAGAAAGTGGCATAGCAGCACTTGTTCGGCTTTGTAATGGAGATATGAGAAAGGCTTTGAACATTTTGCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTATCTTTGTACTGGAAACCCATTACCCAAAGACATTGAGCAAATTTCTTACTGGCTTCTGAATGAACAATTTGCAGATAGTTTCAAAAGAATATATGAAATCAGCACAAGAAAAGGATTGGCTCTGGTGGATATTGTGAGAGAAGTCACAATGTTTGTTTTTAAGATTAAGATGCCTCCAAGCGTTCGAGTACAGTTGGTGAATGATTTAGCTGACATAGAGTACAGATTGAGTTTTGGGTGCAATGAAAAGCTGCAGCTGGGATCGGTTATAGCTTCTTTCTCACGTGCTAGATCTGCACTGGTTGCAGCTGCTAATTAA 1095 0.4374 MAETTSPMLIDDDDNNFSSMPDKGKSVAVAVAGNPPNSKEIPWVEKYRPKSLDDVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYQRMILELNASDDRGIDIVRQQIQDFASSQILSFGVKFSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHITERLEHVVKAEGLDVTESGIAALVRLCNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEISTRKGLALVDIVREVTMFVFKIKMPPSVRVQLVNDLADIEYRLSFGCNEKLQLGSVIASFSRARSALVAAAN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1135 364 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 346 - -
Mibi04g1135 364 CDD HLD_clamp_RFC 200 262 - -
Mibi04g1135 364 CDD AAA 61 199 - -
Mibi04g1135 364 Gene3D - 36 199 IPR027417 -
Mibi04g1135 364 SUPERFAMILY post-AAA+ oligomerization domain-like 265 355 IPR008921 GO:0003677|GO:0006260
Mibi04g1135 364 Gene3D - 265 363 - -
Mibi04g1135 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 258 IPR027417 -
Mibi04g1135 364 FunFam Replication factor C subunit 5 202 264 - -
Mibi04g1135 364 Pfam Replication factor C C-terminal domain 265 351 IPR013748 -
Mibi04g1135 364 Gene3D - 203 264 - -
Mibi04g1135 364 FunFam Replication factor C subunit 5 35 200 - -
Mibi04g1135 364 FunFam Replication factor C subunit 5 265 362 - -
Mibi04g1135 364 Pfam ATPase family associated with various cellular activities (AAA) 77 197 IPR003959 GO:0005524|GO:0016887
Mibi04g1135 364 SMART AAA_5 73 203 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1135 Mibi-ChrMibi04 24736891 24741544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1135 1 363 Core DNA Replication Machinery Family AT1G77470 74.933 0.0 565