LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi04g1134	ATGTTTCCCTCCGCTCAACATTCTCTCAATCCTCATCAACTCTTGCTTTGCTGCTCTCAGTCTCTTAAAAATATGCTCTTCAATGAACATTTCAACCATAGGAGCAGGCATTTAGTGATGACATTTTTTGTGACCAAAATTCGTGTTTTGTTCGTGATAATCTCTTTACTCTCTCTCCAACTTGTTAGATCAAGAAATAGCGATGCCCAAGCACTTTTAGCGCTGAAATCTTCTATTGATGTTCACAATACACTTCCATGGCCGCCAGGAAGCAGAAATCCATGTGACTGGGAAGGAGTTAGAGATTGCTTCAAGGGAAGAGTCCGAAAGCTAGTGCTAGAAAACTTGAACTTAACAGGTTATTTGGACCCAAAGATCTTGAATCGATTGGATCAAATTCGAGTACTTAGTTTTAAGAGCAACTCACTATCTGGTCCAATCCCAGACCTCTCTGCCTTGGTCAATCTCAAATCCATATTTCTCAACAACAACAACTTCTCTGGTGACTTTCCTGCCTCCATCTCTGGTCTCCACCGTGTTAAAGTCATAGTTCTCTCTGGTAACCGGCTCTCTGGCAATATCCCATTGTCGCTGCTCAATGTTCAGCATCTTTACATGCTTTACTTACAAGACAACTCATTCACAGGACCCATACCAAGTCTCAACCAAAGCAGTCTCCGATACTTGAATCTCTCCAACAACCAACTTTCCGGCGAGATCCCGACAAGCCCAGCATTGATCCATTTCAATGGGTCGTCATTTTTGGGAAACCCGGGCTTGTGTGGGGAACAAATCCACAAGGCATGTGAAATGGCTCCATCGGTAAGCCCAAGTTATCCGTTGGTGCCAAGGAGGACAGAGCCTAGGTGGTCATCGTCGTCTCATGGGAAGAAAGTGGTAAAGATAGTAGCAGGGACCATTGGAGGGTTCGTGGTGCTTGTGATATGCTTGGTTGTGATATATAAGATGTGTAAGAATCACAGAGAAGAGAAGGGTTCAATAAGCAGGAAGAAAGGAGGAGCTGAGGGGGGAGGAACAAATATAAAAACAGGAACAGGAGACGAGAGTGGTAGAGGAGGTAATAATGTGGGAAAAGAAGGGGGGTTTTCATGGGAAGATGAGGGACTAGGGAAGTTGGTGTTCTGCGGAGCAGGGGATAGTTATAGGTTGGAGGATTTATTGAAGGCGTCAGCAGAGACATTGGGTAGGGGTAGTATGGGAAGTACATACAAGGCAGTGATGGAATCAGGTTTTATAGTGACGGTGAAGAGGTTAAAGGATGCGAGGTATCCTGGCTTGCAGGAGTTCACAGCACACATGGAGATGCTAGGCAGGCTTAGGCACCCTAATCTGGTCCCACTCCGAGCTTACTTCCAGGCTAAAGAGGAACGCCTTCTTGTTTATGATTACTTTCCCAATGGCAGCCTCTATTCACTTGTCCATGGATCAAAAACTTGTGGTGGGGGAAAGCCTCTTCACTGGACATCATGCCTTAAAATTGCCGAAGACCTAGCAACTGGACTTGTGTACATCCACCAGACCCATGGCCTAATCCATGGGAATCTGAAATCTTCTAATGTGTTGTTGGGTTCAGACTTCGAGTCATGTCTTACAGATTATGGCCTTCAGGTTTTGCTTAATCCAGATTCACTTGAAGAACCGAGCGCAACCACATTATTCTACAGAGCACCGGAATGCCGTAGCATCCGATGGCCTCCCACTCAGCAGGCGGATGTATACAGCTTTGGAGTACTTATCTTGGAGCTTTTAACTGGGAAAACACCCTTCCAAGACCTTGTTCTGGAACATGGTTCAGATATACCTAGGTGGGTTCGGTCCGTGCGAGAAGAAGAGACAGAGTCTGGGTCTGGAGATGACCCTGCCTCAGGGAATGACGCCTCAGAAGAGAAGCTTCAGGCTCTTTTGAACATTGCAATGGCGTGTGTTTCACTGGTACCAGAAAACAGACCAACAATGAAAGAAGTTTTGAGGATGATAAGAGATGCAAGAGCAGAGGCTCAAGTGTCCTCAAACAGTAGTGATCATTCTCCAGGCAGATGGTCGGATACTGTGCAAAGCTTGCCTCGGGAAGAGCATTTGAGCATATGA	2109	0.459	MFPSAQHSLNPHQLLLCCSQSLKNMLFNEHFNHRSRHLVMTFFVTKIRVLFVIISLLSLQLVRSRNSDAQALLALKSSIDVHNTLPWPPGSRNPCDWEGVRDCFKGRVRKLVLENLNLTGYLDPKILNRLDQIRVLSFKSNSLSGPIPDLSALVNLKSIFLNNNNFSGDFPASISGLHRVKVIVLSGNRLSGNIPLSLLNVQHLYMLYLQDNSFTGPIPSLNQSSLRYLNLSNNQLSGEIPTSPALIHFNGSSFLGNPGLCGEQIHKACEMAPSVSPSYPLVPRRTEPRWSSSSHGKKVVKIVAGTIGGFVVLVICLVVIYKMCKNHREEKGSISRKKGGAEGGGTNIKTGTGDESGRGGNNVGKEGGFSWEDEGLGKLVFCGAGDSYRLEDLLKASAETLGRGSMGSTYKAVMESGFIVTVKRLKDARYPGLQEFTAHMEMLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLYSLVHGSKTCGGGKPLHWTSCLKIAEDLATGLVYIHQTHGLIHGNLKSSNVLLGSDFESCLTDYGLQVLLNPDSLEEPSATTLFYRAPECRSIRWPPTQQADVYSFGVLILELLTGKTPFQDLVLEHGSDIPRWVRSVREEETESGSGDDPASGNDASEEKLQALLNIAMACVSLVPENRPTMKEVLRMIRDARAEAQVSSNSSDHSPGRWSDTVQSLPREEHLSI	702

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi04g1134	702	Gene3D	Ribonuclease Inhibitor	223	272	IPR032675	-
	Mibi04g1134	702	ProSiteProfiles	Protein kinase domain profile.	395	671	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi04g1134	702	MobiDBLite	consensus disorder prediction	332	364	-	-
	Mibi04g1134	702	Gene3D	Phosphorylase Kinase; domain 1	387	470	-	-
	Mibi04g1134	702	ProSiteProfiles	Leucine-rich repeat profile.	225	247	IPR001611	GO:0005515
	Mibi04g1134	702	Gene3D	Transferase(Phosphotransferase) domain 1	471	690	-	-
	Mibi04g1134	702	Gene3D	Ribonuclease Inhibitor	64	222	IPR032675	-
	Mibi04g1134	702	SUPERFAMILY	Protein kinase-like (PK-like)	399	666	IPR011009	-
	Mibi04g1134	702	MobiDBLite	consensus disorder prediction	673	702	-	-
	Mibi04g1134	702	Pfam	Leucine rich repeat N-terminal domain	66	101	IPR013210	-
	Mibi04g1134	702	Pfam	Protein kinase domain	398	664	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi04g1134	702	MobiDBLite	consensus disorder prediction	612	632	-	-
	Mibi04g1134	702	SUPERFAMILY	L domain-like	66	262	-	-
	Mibi04g1134	702	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	56	673	-	-
	Mibi04g1134	702	FunFam	Nuclear pore complex protein NUP107	65	220	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi04g1134	Mibi-ChrMibi04	24721604	24726381	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi04g1134	49	702	Receptor kinase-like Gene Family	AT1G60630	58.902	0.0	744

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Mibi04g1134		Pkinase	5e-35	CL0016