Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1122 ATGGTGAGAGGGAAAATAGAGATGAAGCGTATAGAGAACGCCACAAATAGACAAGTGACATTCTCAAAGAGGCGTAATGGTCTCTTAAAGAAGGCTTTTGAGCTCTCAGTTCTATGTGAAGTTGAGGTTGCCCTCATCATCTTTTCTCCAAGAGGCAGGCTTTATGAATATGCAAGCTCCAGGTTGCAGGAGACAATTGAACGATATCGTAGTTATACTAGAGATGCTGAGACAGCCGCCAGATACGTGGAACAAAATATGCAGATTCTAAAGGAAGAAACAGAAAATATGATGGAGAAGGTTGAGCATCTTGAAGTTTCAAAACGGAGACTCCTGGGAGAAGAATTAGGCTCATGTTCGCTAGCAGAACTAGAAGAGTTACAACAGCAATTGCAAAAGAGTGTAAATAACGTCAGAGCAAGAAAGAATCGGGCTTTTAGAGAACAAATAGAGCGAATAAAAGAAAAGGAACAAACCCTAATAGCTGAAAACGCAAGGCTCTGTGAAAAGTATGGAAACATGCTTGATCATCATCAGATGAAAGAGAATACTAGAGAAAATCCAACCTCCTCAGAAAATAGTCCCCCATTAGATGTGGAAACTAGTTTGTTCATTGGACTCCCAGAAACAAGAACAAGATGCAATATTATCATCCCAAGTAATACTCCTGAGGACTAA 678 0.4012 MVRGKIEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCEVEVALIIFSPRGRLYEYASSRLQETIERYRSYTRDAETAARYVEQNMQILKEETENMMEKVEHLEVSKRRLLGEELGSCSLAELEELQQQLQKSVNNVRARKNRAFREQIERIKEKEQTLIAENARLCEKYGNMLDHHQMKENTRENPTSSENSPPLDVETSLFIGLPETRTRCNIIIPSNTPED 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1122 225 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Mibi04g1122 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi04g1122 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi04g1122 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi04g1122 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi04g1122 225 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Mibi04g1122 225 Coils Coil 121 170 - -
Mibi04g1122 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi04g1122 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi04g1122 225 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Mibi04g1122 225 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi04g1122 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi04g1122 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi04g1122 225 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mibi04g1122 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 190 - -
Mibi04g1122 225 Coils Coil 80 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1122 Mibi-ChrMibi04 24205709 24217781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1122 1 156 MADS-box Gene Family AT2G45660 64.744 2.84e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi04g1122 K-box 6.4e-22 No_clan