Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1121 ATGAAGCGAAGAATTTTCAAACTCCATGAATTGATAGAGGAAGAAAAGGAAAGAATATCAAAGATGGTGAGAGGTAAGACACAAATGAAGCGCATAGAGAACGCAACAAGCAGGCAAGTGACATTCTCAAAGAGACGTAATGGACTCTTAAAGAAGGCTTTTGAGCTTTCAGTTCTGTGTGATGCTGAGGTAGCTCTCATTATTTTTTCTCCCAGAGGCAAGCTCTATGAATATGCAAGTTCCAGCATGCAGGCAACAATTGAACGTTACCGCAATCATAACAGAGATGCTCAAACAGCCACCGTATTTGTAGAACAAAATATGCAGCATCTAAAGCAAGAAACAGCGACTATGATGGAGAAGATTGAGCAGCTTGAAATTTCGAAAAGGAAGCTCTTGGGAGAAGATTTTGGCTCATGCTCCATAAAAGAACTAGAAGAAATAGAACAGCGATTGGAAAGCAGTGTAAGAAAAGTTCGTGAGAGGAAGAGTCAAGTTTATAACGAACAAATGGAGAATCTAAAAGAAAAGGGGAAAACCCTAGCAGCAGAAAATGCAAGGCTCTCTGAGAAGTATAATAGCATGGCAAAGCAAGGAAGGGAGAAGAATCATGGCGAAAATCCAGCCTCCTCAGACAACTTTCCAACTTCAGGAGTTGAAACTGACTTGTTCATTGGATTACCAGAAACAAGAGGAATCACTCTTCCGCTTCATGTTGTCTGA 723 0.4066 MKRRIFKLHELIEEEKERISKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEYASSSMQATIERYRNHNRDAQTATVFVEQNMQHLKQETATMMEKIEQLEISKRKLLGEDFGSCSIKELEEIEQRLESSVRKVRERKSQVYNEQMENLKEKGKTLAAENARLSEKYNSMAKQGREKNHGENPASSDNFPTSGVETDLFIGLPETRGITLPLHVV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1121 240 ProSitePatterns MADS-box domain signature. 24 78 IPR002100 GO:0003677|GO:0046983
Mibi04g1121 240 Coils Coil 142 191 - -
Mibi04g1121 240 MobiDBLite consensus disorder prediction 194 216 - -
Mibi04g1121 240 Pfam K-box region 106 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi04g1121 240 CDD MADS_MEF2_like 24 99 IPR033896 GO:0000977|GO:0045944
Mibi04g1121 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
Mibi04g1121 240 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Mibi04g1121 240 Gene3D - 34 106 IPR036879 GO:0003677|GO:0046983
Mibi04g1121 240 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Mibi04g1121 240 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Mibi04g1121 240 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Mibi04g1121 240 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Mibi04g1121 240 SUPERFAMILY SRF-like 24 97 IPR036879 GO:0003677|GO:0046983
Mibi04g1121 240 Coils Coil 108 128 - -
Mibi04g1121 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 24 193 - -
Mibi04g1121 240 FunFam MADS-box protein SOC1 35 116 - -
Mibi04g1121 240 ProSiteProfiles K-box domain profile. 108 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1121 Mibi-ChrMibi04 24027066 24040205 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1121 22 179 MADS-box Gene Family AT2G45660 72.785 1.54e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi04g1121 K-box 5.8e-25 No_clan