Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1120 ATGAAGCGTATAGAGAACGCCACAAATAGACAAGTGACATTCTCAAAGAGGCGTAATGGTCTCTTAAAGAAGGCTTTTGAGCTCTCAGTTCTGTGTCAAGTTGAGGTTGCTCTCATTGTCTTCTCTTCCACAGGCAAGCTCTATGAATTCGCAAGCTCCAGGAAACTAATTGGAGAAGGTCTGAGCACTTATTCCCTACAAGAACTGGAAGAGATTGAACAACGGGTTAGAAAGGGTGTCACAAACGTTCGAGCAAGAAAGAATCAAATCATTAAGGATCAAATGGAGAAATTAGTAGAAAAGGAAAAAATCCTAACAGCAGAATATGCAAGGCTTTCTGAGAAGTGGGGTACTGAGGCAAATCAAGGAAAGCAGGATCAGGGTGAAAATATTTCATCTTCAGATGTGGACACTGACTTGTTCATCGGACTTCCAAAAACAGGATCACGAAATTATTTATGA 462 0.4069 MKRIENATNRQVTFSKRRNGLLKKAFELSVLCQVEVALIVFSSTGKLYEFASSRKLIGEGLSTYSLQELEEIEQRVRKGVTNVRARKNQIIKDQMEKLVEKEKILTAEYARLSEKWGTEANQGKQDQGENISSSDVDTDLFIGLPKTGSRNYL 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1120 153 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Mibi04g1120 153 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Mibi04g1120 153 SUPERFAMILY SRF-like 1 58 IPR036879 GO:0003677|GO:0046983
Mibi04g1120 153 Gene3D - 6 75 IPR036879 GO:0003677|GO:0046983
Mibi04g1120 153 CDD MADS_MEF2_like 1 53 IPR033896 GO:0000977|GO:0045944
Mibi04g1120 153 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Mibi04g1120 153 Coils Coil 95 115 - -
Mibi04g1120 153 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Mibi04g1120 153 Pfam K-box region 52 115 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi04g1120 153 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 117 - -
Mibi04g1120 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1120 Mibi-ChrMibi04 24007840 24014069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1120 1 147 MADS-box Gene Family AT4G22950 39.109 1.76e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi04g1120 K-box 5.4e-17 No_clan