Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1119 ATGAAGTGTATAGAGAACGCAACAAGCAGGCAAGTGACATTCTCAAAGAGACGTAATGGACTCTTAAAGAAGGCTTTTGACCTTTCAGTTCTGTGTGATGCTGAGGTTGCTCTCATTATTTTCTCTCCCAGAGGCAAGCTCTATGAATATGCAAGCTCCAGCATGCAGGCAACAATTGAACGTTACCGCAATCATAGCAGAGATGCTCGAACAGCAACCGTATTTGTAGAACAAAATATGCAGCAACAAACTCTACATTAA 261 0.4176 MKCIENATSRQVTFSKRRNGLLKKAFDLSVLCDAEVALIIFSPRGKLYEYASSSMQATIERYRNHSRDARTATVFVEQNMQQQTLH 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1119 86 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Mibi04g1119 86 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Mibi04g1119 86 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Mibi04g1119 86 Gene3D - 6 84 IPR036879 GO:0003677|GO:0046983
Mibi04g1119 86 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 50 IPR002100 GO:0003677|GO:0046983
Mibi04g1119 86 FunFam MADS-box transcription factor 1 6 77 - -
Mibi04g1119 86 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 81 - -
Mibi04g1119 86 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Mibi04g1119 86 CDD MADS_MEF2_like 1 71 IPR033896 GO:0000977|GO:0045944
Mibi04g1119 86 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1119 Mibi-ChrMibi04 23948601 23956481 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1119 1 81 MADS-box Gene Family AT2G45660 74.074 5.05e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi04g1119 SRF-TF 3.9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g1119 04 23948601 23956481 Mibi04g1119 04 23948601 23956481 ECH