Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1117 ATGGTGAGAGGGAAGATAGAGATGAAGCGTATAGAGAACGCCACAAATAGACAAGTGACGTTCTCAAAGAGGCGTAATGGTCTCTTAAAGAAGGCTTTTGAGCTCTCAGTTCTGTGTGAAGTTGAGGTTGCTCTCATTGTCTTCTCTTCCAGAGGCAAGCTTTATGAATTCGCAAGCTCCAGCTTGAAGGAGACAATTGACCGTTATCACACATATGTTAAAGATTCTCATTCATTCGAACAAAATATGCAGCATCTGAATCAAGAAACAGCAAGTATGAAGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAACTAGTTGGAGAAGGTCTGAGCACTTATTCCCTACAAGAACTGGAAGAGATTGAACAACGGGTTAGAAAGAGTGTCACAAACGTTCGAGCAAGAAAGAATCAAATTTTTAAGGATCAAATGGAGAAACTAGTAGAAAAGGAAAAAACCCTAACAGCAGAATATGCAAGGCTTTCTGAGAAGTGTGGTATGGAGGCGAATCAAGGAAAGCAAAATCAGGGTGAAAATATTTTATCTTCAGATGTGGAGACTGACTTGTTCATCGGACTTCCACAAGCAGGATCACGAAATCATTTATGA 615 0.4 MVRGKIEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCEVEVALIVFSSRGKLYEFASSSLKETIDRYHTYVKDSHSFEQNMQHLNQETASMKKKIELLEASKRKLVGEGLSTYSLQELEEIEQRVRKSVTNVRARKNQIFKDQMEKLVEKEKTLTAEYARLSEKCGMEANQGKQNQGENILSSDVETDLFIGLPQAGSRNHL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1117 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi04g1117 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi04g1117 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi04g1117 204 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Mibi04g1117 204 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi04g1117 204 Gene3D - 13 106 IPR036879 GO:0003677|GO:0046983
Mibi04g1117 204 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Mibi04g1117 204 Coils Coil 83 103 - -
Mibi04g1117 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi04g1117 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mibi04g1117 204 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi04g1117 204 Coils Coil 117 137 - -
Mibi04g1117 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi04g1117 204 Coils Coil 139 166 - -
Mibi04g1117 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Mibi04g1117 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi04g1117 204 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1117 Mibi-ChrMibi04 23924920 23930982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1117 1 154 MADS-box Gene Family AT2G45660 66.456 1.06e-69 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi04g1117 K-box 1.2e-22 No_clan