Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1088 ATGGTTGAACAACGTGGGGAAGTAGATGATGACTGTTCCATTGAAGGCTGGTTCTTGAGAGCACAAGAACTTGTACCCGTTGCGGTTAAAAAGGCGAAAGAAGAGGTAAATTGTTTTTCTAGTAGGTGGAAAGTGATTGTTTCAAAGATAGAACAGATCCCATCATGCTTATCAGACTTGTCCAGCCATCCATGCTTCTCCAAGAATGCTCTTTGTAAGGAGCAATTGCAGGCTGTGTCAAAGACCCTTGAAGAAGCCATTCGTTTAGCCGAATTATGCGGTTCTAAGGAGAGGTACGAAGGTAAGCTTCGAATGCAGAGCGATCTCGATGCTCTATCGGGGAAATTGGATTTGAATTTACGAGATTGTATGATATTGATCAAGACTGGTGTACTTGGTGAGTTTACTTTTCCATTGGGAATGTCTGATGAAGTGAAACAAGGGAATGATGTGAGAGAATTATTCGCACGCCTTCAAATTGGTGACTTGGAGGCAAAGAACAAAGCTATAGACAGTCTAGTTGAAGCAATGAATGAAGAAGAAAAGAGTTTTATGGCTGCTATAGGACGAAGCCAAGTTGCTTCTTTAGCTCAATTGTTAACATCTGCTTGTACTAGGATAAGGGAAAAAGCAGTTACTCTCGTATGTTGTCTTGCTGAATCAGGTAATTGTGAGAATTGGCTTCTCTCTGAAGGAGTTTTGCCGCCTTTGATTCGGCTTATCGAATTTGGTGGGGCTATTGGTAGAGAGAAGGCTGCAATATGCCTTCAAAGGATGTCCATTTCGGAGGAATCAGCCAGAGATATTGTCAGAAACGGCGGAGTTAGGCCACTGATTGAGCTATGTCATAATGGGGATTCTGTGTCCCAATCTGTTGCTGCTTGTTCTTCGAAGAATATATCTGTTGTTCCTGAATTGAGACAAGCATTGGCTGAAGAAGGCATTGTGAAGACCATGATCAATCTTCTTGATCATGGAATTGTACCAGGATCTAAGGAATATGCTTCAGAGTGTTTACAAAGTCTCACATCAAGCAATGAGAATCTAAGAAGGTCAGTTATATCAGAAGGTGGTGCTAAAAGCCTTCTTGCTTATCTTGATTCTCCAACACCTCAAGAATCAGCTGTTACAGCATTGAGGAATTTAGTTGGATCAATCAGCGAGCTGGATTTGATCTCATTAGGCCTCCTTCCTCGAATGATCCACGTGCTAAACTTGGGATCTTCAGGAGCTCAGCAGGCTGCTGTGTCCACTATATGCCGTGTTTTGATCTCATCAGAAATGAAGAAATTGGTGGCTGAGGCTGGATTTATCCCACTGCTGATTAAAATGCTGGAAGCTAAATCGAATAATGTGAGGGAATTCGCGGCGCAAGCCATCGCGAGCCTGATGACAGTTATGCAAAACCGGAGGGAGGTGAGGAGGAATGATAAGAGTGTGCCAAATTTGGTTCAATTGCTTGATCCAAGTCCGCATAATACTGCAAAGAAATATGCAATTTCTTGTTTGTGTTCACTTTCTTCAAGCAGGAAATGTAAGAAGCTGATGATTGCTTATGGGGCAATTGGATATCTAAAGAAGCTTAAAGAGATGGATATTCCAGGTACTAAAATGCTACTTGATAGATTGGAAAGAGGGAAATTGAGAAGCTTATTTAGCAGGAAATAA 1668 0.4185 MVEQRGEVDDDCSIEGWFLRAQELVPVAVKKAKEEVNCFSSRWKVIVSKIEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLEEAIRLAELCGSKERYEGKLRMQSDLDALSGKLDLNLRDCMILIKTGVLGEFTFPLGMSDEVKQGNDVRELFARLQIGDLEAKNKAIDSLVEAMNEEEKSFMAAIGRSQVASLAQLLTSACTRIREKAVTLVCCLAESGNCENWLLSEGVLPPLIRLIEFGGAIGREKAAICLQRMSISEESARDIVRNGGVRPLIELCHNGDSVSQSVAACSSKNISVVPELRQALAEEGIVKTMINLLDHGIVPGSKEYASECLQSLTSSNENLRRSVISEGGAKSLLAYLDSPTPQESAVTALRNLVGSISELDLISLGLLPRMIHVLNLGSSGAQQAAVSTICRVLISSEMKKLVAEAGFIPLLIKMLEAKSNNVREFAAQAIASLMTVMQNRREVRRNDKSVPNLVQLLDPSPHNTAKKYAISCLCSLSSSRKCKKLMIAYGAIGYLKKLKEMDIPGTKMLLDRLERGKLRSLFSRK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1088 555 SUPERFAMILY ARM repeat 192 529 IPR016024 -
Mibi04g1088 555 SMART arm_5 345 384 IPR000225 GO:0005515
Mibi04g1088 555 SMART arm_5 466 508 IPR000225 GO:0005515
Mibi04g1088 555 SMART arm_5 425 465 IPR000225 GO:0005515
Mibi04g1088 555 SMART arm_5 262 302 IPR000225 GO:0005515
Mibi04g1088 555 SMART arm_5 303 344 IPR000225 GO:0005515
Mibi04g1088 555 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 15 553 - -
Mibi04g1088 555 Coils Coil 160 183 - -
Mibi04g1088 555 Pfam HEAT repeat 437 466 IPR000357 GO:0005515
Mibi04g1088 555 Gene3D - 148 534 IPR011989 -
Mibi04g1088 555 ProSiteProfiles HEAT repeat profile. 437 475 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1088 Mibi-ChrMibi04 22741144 22742811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1088 411 533 U-box Gene Family AT3G54790 27.642 6.97e-06 47.0