Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1087 ATGGCAGGAGCTGAATCAAACAGACCCATCACAAAGATCAAAAGGTTCATAGGGGTAAGACAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCATCTCAACATGTTAGGCTATGGCTAGGAACCTATGACACCCCAGAGGAAGCGGCTCAGGCTTACGACGAGGCGGCTCGAACCTTACGTGGCGAAAACGCCCGAACCAATTTCGCGCTGCCAGCTAGCAAATCAGCCACCGGTGAATCCGGATCCGAAGCCAAACATGGGCTAAATTTTGCTTCTTTGAAAGCTAAGCTGAGCAAGAATCTTCAGAGTATAATAACCAGATCAGGAAGTGAAACTACGTCGTCTAAGAGTAGGGTAAGTGACCATACAACTTTTGCTAGCATATTTCATCCAAGGAGGAGTTTCTTACCATACCAGATCTCTTCATCACTTGATTCAATGAAGAACATGGAGATTATGGTTCAGCCTAGTATTATAGTACCTCCTTCTGAAATTGAGAATCACCATCAGCCTAGTTCTTGGGAAAATTCCAGTGTTTCTCATGATTGTAGTGGCTTCTCTGATAATTGGGCCGGGTTCCGGCAAACCGTGACGGTTGAATCCGCCGTGTCGGATGGGTCGGATCCTGGGGAGGTTAGTACTATTGGGGATCAAGGGCTTATGGAGCAAGTGATGGGATGGATCAATAATAGTTCTGAGGAGGGTTCAAGGAGTTGTAAGAGGCTTAAGGTGTCTTCTTCAGTGTTTGTGCCTCCAACTTTTAGTGGGTCTCCATGTAGTAGTAGTTGTGGCTCTACCTATTATGGTTGTGATTCTCCATATATGACATAA 840 0.4595 MAGAESNRPITKIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARTLRGENARTNFALPASKSATGESGSEAKHGLNFASLKAKLSKNLQSIITRSGSETTSSKSRVSDHTTFASIFHPRRSFLPYQISSSLDSMKNMEIMVQPSIIVPPSEIENHHQPSSWENSSVSHDCSGFSDNWAGFRQTVTVESAVSDGSDPGEVSTIGDQGLMEQVMGWINNSSEEGSRSCKRLKVSSSVFVPPTFSGSPCSSSCGSTYYGCDSPYMT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1087 279 FunFam ethylene-responsive transcription factor RAP2-11 14 73 - -
Mibi04g1087 279 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 144 - -
Mibi04g1087 279 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Mibi04g1087 279 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Mibi04g1087 279 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Mibi04g1087 279 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Mibi04g1087 279 CDD AP2 14 72 IPR001471 GO:0003700|GO:0006355
Mibi04g1087 279 SUPERFAMILY DNA-binding domain 15 72 IPR016177 GO:0003677
Mibi04g1087 279 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Mibi04g1087 279 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1087 Mibi-ChrMibi04 22681827 22682666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1087 15 72 AP2-EREBP Transcription Factor Family AT5G19790 72.414 2.20e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi04g1087 AP2 3.9e-15 CL0081