Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1020 ATGACCTCCACATCTCGAGGTTCCGACGGAGCCTCCGATGATACCAATAACAGCTTCGTCACCGTCGCCGGCACGGCGGAGCATCCGGCCGTCGCCGGCGACAATGAGTCTCCTTCCGCCGCCGACCACAACCACCACATTGATGTCTATGATAATGCCGATGACGATGACTTGCTGGTGGATCCGAAAGATCCTTTCGACATTGCTCAAACAAAGAATGCTCCTCGTGAGGCACTCCAACGGTGGAGACAAGCAGCACTAGTGCTCAATGCCTCACGGCGTTTCCGTTACACCCTGGACTTGAAAAAAGATGAAGAGAAACAACAAAAGAAAAACTTGATTAGAGCCCACGCACAAGTCATAAGAGCTGCATTGCTTTTCAAATTGGCCGGTGAACGTGAAATAGTTATAACTACACCAGCGCTATCCCCAGCTCGAATCAATGTCGGTGATTTTGGAGTTGGACTTGAAAAACTTGTCGCAATGTTTAAGGATCATGACGTTTCTGCTTTAGAGCAATATGGAGGGGCTAAAGGTTTATCAAATTTACTAAAATCCAGTCCCGAGAAAGGGATTGATGGCAGTAATGATGATCTTTTAAAAAGGAAAAGCTCATTCGGAACAAATACCTATCCTCGGAAAAAGGGGAGGAGTTTCTTTAGGTTTCTATGGGAAGCTTGGCAAGATCTGACCCTAATCATTTTGATTATAGCAGCTGCAGTGTCTTTAGTACTTGGAATAAAAACAGAGGGTCTGAAAGAAGGGTGGTATGATGGGGGAAGCATTGCTTTTGCAGTTTTACTTGTCATTGTAGTTACAGCTGTCAGTGATTACCGGCAATCTCTGCAGTTTCAGAATTTAAATGCAGAAAAACAAAATATACAACTAGAGGTCATGAGAGGTGGTAGAACAGTAAAGATATCAATTTTTGATATTGTTGTTGGTGATGTTGTGCCTCTTAAAATAGGGGATCAGGTTCCTGCCGATGGAGTTCTAATCACCGGTCACTCGCTTGCCATTGATGAATCCAGCATGACTGGTGAAAGCAAAATTGTTCGCAAAGACCATAAAGCGCCATTTTTGATGTCTGGCTGCAAAGTAGCAGATGGAGTTGGTGCTATGCTGGTAACCGGTGTTGGCATCAATACTGAGTGGGGACTGTTGATGGCAAGCATATCCGAGGATACTGGCGAAGAGACTCCTTTACAGGTACGCTTGAATGGAGTAGCAACTTTTATTGGTATAGTAGGGCTTTCAGTAGCTGTTTTAGTGTTGGCTGTCCTCTTGGGAAGATACTTTTCTGGGCACACGAAGGATCTGAATGGAAACGTTGAGTTTGTTGGCGGACAGACTAGTGCTAGTAAAGCAGTAGATGGGGTCATCAAAATTTTTACCATAGCTGTCACAATTGTGGTTGTTGCAGTTCCTGAAGGCCTTCCCTTGGCTGTTACCTTAACCCTTGCATACTCAATGCGAAAGATGATGGCAGACAAAGCATTGGTACGGAGGCTCTCAGCATGTGAAACTATGGGTTCTGCTACAACAATTTGCAGTGATAAGACAGGAACATTGACATTGAATCAGATGACTGTAGTTGAGGCATATGTCGGGAAAAAGAAAATAAACCTGCCAGATGCCTTACCGAATATGCATCCAGAAGTTATATCTCTAATAAACGAGGGCGTTGCACAGAATAGTAGTGGAAATGTTTTTGAGCCCAAGGATGGTGGAGAAGTAGAGATTTCGGGATCTCCTACAGAAAAGGCAATCCTTTCTTGGGCTGTCAAGTTGGGAATGAAATTCGATCTTGTCAAATCAAATTCAACAATTCTACATGTCTTCCCTTTCAACTCTGAGAAAAAGCGAGGGGGTGTTGCGGTGAAGCTGGCGGACTCTAGTGTACACATTCATTGGAAAGGAGCTGCAGAGATAGTTCTAGGCTCATGCACCCAATATCTTGATTCAAATTGTCACTTGGAGTCTATTGATGGAGAGGACTTTTTCAAGGAGGCTATTGAAGACATGGCTGCTCGCAGCCTGCGTTGCGTCGCCATTGCATATAGATCATATGAAACAGACAAAGTTCCCTCTAATGAGGATGATTTGGACCACTGGTCCTTGCCCGAGCATGAACTTATTTTGCTTGCTATTGTAGGCATAAAGGATCCCTGCCGCTCTGGAGTCAAAGATGCTGTCAAAGTATGCACTAAAGCTGGGGTTAAGGTACGCATGGTTACTGGAGACAATATTCAGACGGCAAAGGCAATTGCTTTGGAGTGTGGGATACTTTCTTCAAATGAAGATCTTGCTGAGCCAAATGTAATTGAGGGAAAGAAATTCCGTACATTATCTGAAAATGAAAGGGAACTTGTTGCTAAACGAATAACAGTTATGGGGAGATCTTCTCCAAATGACAAGCTTTTGCTTGTACAAGCACTGCGTAAGGGAGGTGAAGTAGTTGCTGTCACAGGAGATGGTACTAACGATGCACCTGCGCTTCATGAGGCAGATATTGGTCTTTCAATGGGCATTCAAGGAACTGAAGTTGCTAAAGAAAGCTCGGATATTATAATTCTGGATGATAACTTTGCATCAGTTGTGAAGGTTGTCCGATGGGGCCGCTCTGTGTATGCAAATATTCAGAAATTTATTCAGTTCCAGCTTACAGTTAATGTTGCAGCTCTTGTAATAAATGTTGTGGCTGCAGTATCTTCTGGTGATGTTCCTTTAAATGCAGTGCAGCTTTTGTGGGTTAACCTTATCATGGACACACTTGGAGCCCTTGCATTGGCTACTGAACCACCAACAGACCATCTTATGCACAGAACACCAGTTGGCAGAAGGGAATCTCTTATAACAAATATTATGTGGAGGAACTTGCTCGTACAGGCTCTATATCAAGTTACAGTTCTACTTGTTTTGAACTTTGGCGGCAATCAAATTCTGCGAAAGCATTATGCTAGAGCTCATATACATCAACTGAAAAATACTTTGATATTCAACGCATTTGTCTTCTGCCAAATATTCAATGAGTTCAACGCTCGGAAACCAGACGAAATGAATGCCTTCCGGGGAGTGACTAAGAACCGCCTCTTCATGGGAATTGTTGCAATTACCTTAATACTTCAGATAATCATAATTGAGTTCCTTGGGAAGTTCACATCAACCGTGAGGCTTGATTGGAAGTTGTGGCTTGTTTCTATTGCCATTGGACTGGTCAGTTGGCCCCTAGCTGTAGTGGGGAAATTAATTCCAGTTCCAAAAACACCAATTTCACGATACTTGAAGAAGCCATGGAAAGGATGCTGGAAGCCTCGTGGCATGTTGTTATAA 3333 0.435 MTSTSRGSDGASDDTNNSFVTVAGTAEHPAVAGDNESPSAADHNHHIDVYDNADDDDLLVDPKDPFDIAQTKNAPREALQRWRQAALVLNASRRFRYTLDLKKDEEKQQKKNLIRAHAQVIRAALLFKLAGEREIVITTPALSPARINVGDFGVGLEKLVAMFKDHDVSALEQYGGAKGLSNLLKSSPEKGIDGSNDDLLKRKSSFGTNTYPRKKGRSFFRFLWEAWQDLTLIILIIAAAVSLVLGIKTEGLKEGWYDGGSIAFAVLLVIVVTAVSDYRQSLQFQNLNAEKQNIQLEVMRGGRTVKISIFDIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVRKDHKAPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLAVLLGRYFSGHTKDLNGNVEFVGGQTSASKAVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGKKKINLPDALPNMHPEVISLINEGVAQNSSGNVFEPKDGGEVEISGSPTEKAILSWAVKLGMKFDLVKSNSTILHVFPFNSEKKRGGVAVKLADSSVHIHWKGAAEIVLGSCTQYLDSNCHLESIDGEDFFKEAIEDMAARSLRCVAIAYRSYETDKVPSNEDDLDHWSLPEHELILLAIVGIKDPCRSGVKDAVKVCTKAGVKVRMVTGDNIQTAKAIALECGILSSNEDLAEPNVIEGKKFRTLSENERELVAKRITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRTPVGRRESLITNIMWRNLLVQALYQVTVLLVLNFGGNQILRKHYARAHIHQLKNTLIFNAFVFCQIFNEFNARKPDEMNAFRGVTKNRLFMGIVAITLILQIIIIEFLGKFTSTVRLDWKLWLVSIAIGLVSWPLAVVGKLIPVPKTPISRYLKKPWKGCWKPRGMLL 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1020 1110 FunFam Calcium-transporting ATPase 715 868 - -
Mibi04g1020 1110 SUPERFAMILY Calcium ATPase, transmembrane domain M 174 1086 IPR023298 -
Mibi04g1020 1110 Pfam Cation transporter/ATPase, N-terminus 175 242 IPR004014 -
Mibi04g1020 1110 CDD P-type_ATPase_Ca_PMCA-like 199 956 - -
Mibi04g1020 1110 Gene3D - 514 868 IPR023214 -
Mibi04g1020 1110 FunFam Calcium-transporting ATPase 840 1088 - -
Mibi04g1020 1110 SFLD p-type atpase 499 875 IPR044492 -
Mibi04g1020 1110 PANTHER CATION TRANSPORTING ATPASE 112 1086 - -
Mibi04g1020 1110 FunFam Calcium-transporting ATPase 74 130 - -
Mibi04g1020 1110 FunFam Calcium-transporting ATPase 9 plasma membrane-type 371 541 - -
Mibi04g1020 1110 SUPERFAMILY HAD-like 515 928 IPR036412 -
Mibi04g1020 1110 Gene3D - 196 393 - -
Mibi04g1020 1110 PRINTS P-type cation-transporting ATPase superfamily signature 738 748 - -
Mibi04g1020 1110 PRINTS P-type cation-transporting ATPase superfamily signature 341 355 - -
Mibi04g1020 1110 PRINTS P-type cation-transporting ATPase superfamily signature 716 727 - -
Mibi04g1020 1110 PRINTS P-type cation-transporting ATPase superfamily signature 517 531 - -
Mibi04g1020 1110 PRINTS P-type cation-transporting ATPase superfamily signature 847 859 - -
Mibi04g1020 1110 PRINTS P-type cation-transporting ATPase superfamily signature 823 842 - -
Mibi04g1020 1110 MobiDBLite consensus disorder prediction 1 23 - -
Mibi04g1020 1110 FunFam Calcium-transporting ATPase 527 723 - -
Mibi04g1020 1110 Pfam E1-E2 ATPase 294 495 - -
Mibi04g1020 1110 Pfam Ca2+-ATPase N terminal autoinhibitory domain 63 106 IPR024750 GO:0005516
Mibi04g1020 1110 Pfam Cation transporting ATPase, C-terminus 908 1084 IPR006068 -
Mibi04g1020 1110 Pfam haloacid dehalogenase-like hydrolase 514 837 - -
Mibi04g1020 1110 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 455 540 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi04g1020 1110 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 791 903 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Mibi04g1020 1110 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 167 1086 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Mibi04g1020 1110 MobiDBLite consensus disorder prediction 1 47 - -
Mibi04g1020 1110 FunFam Calcium-transporting ATPase 225 282 - -
Mibi04g1020 1110 Gene3D - 527 723 IPR023299 GO:0000166
Mibi04g1020 1110 ProSitePatterns E1-E2 ATPases phosphorylation site. 519 525 IPR018303 -
Mibi04g1020 1110 SFLD Haloacid Dehalogenase 499 875 - -
Mibi04g1020 1110 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 524 720 IPR023299 GO:0000166
Mibi04g1020 1110 PRINTS Sodium/potassium-transporting ATPase signature 636 654 - -
Mibi04g1020 1110 PRINTS Sodium/potassium-transporting ATPase signature 260 280 - -
Mibi04g1020 1110 PRINTS Sodium/potassium-transporting ATPase signature 510 531 - -
Mibi04g1020 1110 FunFam Calcium-transporting ATPase 273 393 - -
Mibi04g1020 1110 Gene3D - 76 129 - -
Mibi04g1020 1110 SMART Cation_ATPase_N_a_2 176 247 IPR004014 -
Mibi04g1020 1110 Gene3D - 225 1075 - -
Mibi04g1020 1110 SUPERFAMILY Calcium ATPase, transduction domain A 295 390 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1020 Mibi-ChrMibi04 20670907 20685849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1020 12 1100 Primary Pumps ATPases AT3G21180 74.840 0.0 1620