Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g1004 ATGAGACTCCTATTATTTATTCTATGCTTGTCTGTCCCTTTATATGTTGCCTCCAACTTGAGTTCAGATGGGTTGACTTTATTGTCACTTCTCAACCACTGGACTTCTGTGCCTCCTTCCGTAAAGTCAAGATGGAAGTCCACTGATTCTACCCCTTGCTTATGGATAGGAATACAATGTGACCATTACAGCAATGTGATCTTCCTAAACCTCACCGCATACCGGATTTTTGGTAAACTGGGAGTAGAAATTGGACAGTTGACTCACTTGCAGAACCTTTTGTTGGCAACAAATGGTTTCTCAGGAAGTATACCCCCAGAGTTAGGCAATTGCAGTCTGCTTGAGTATATCGATCTTTCTGATAACTACTTTAATGGACGAATTCCACATACCTTGAAAAAGTTGGAACATTTAAGGTATATGACTTTATCTTCTAATATGCTCAATGGTGAAATTCCTGATTCACTTTTTCAAATTCCTGAACTAGAGGGGATTGATCTTCACAATAACAATTTGAGTGGTCCCCTCCCATCCAACATTGGGAACACCACTAAATTGTTTAAGCTGCATCTATCCAGCAATCAGTTGTCAGGAACAATTCCCTCTTCCATAGGTAACTGCAGTAAACTAGAGGCACTATTTGTTAATGATAACATAGTGACAGGCGTTCTGCCTCAGAGTTTGAACAATCTGAAGAATCTTGTTTATTTAGATGTCAAAAACAATAGCCTTGGTGGTATCATCCCTCTTGGCTCTGGAAGTTGCAGCAAGTTATCTATTTTGGATCTGTCATTCAATGAATTTAGTGGTGGCATTCCCTCAGGCTTGGGGAATTGTAGCGATTTATTGGAACTTGCTGCCATGAAGAGCAACTTAGTCGGAAGCATTCCATCATCCTTAGGATTATTATCAAAGCTTTCAATTCTTTGCCTTCCTGAGAACCATTTGGCTGGATTTATACCTCCAGAAATTGGCAATTGCAAATCTTTGAAGAAGTTACATCTATACTCCAATCAATTAGGGGGAACAATTCCACATGAATTGGGAGGATTGAGTGAATTGGAGGACCTTGAAATGTACTCCAACCGTTTGACAGGTAATATTCCACTCACCATTTGGAGGATTCAAAATCTTAAGCATGTCCTTCTTCATAATAATAGCCTTTCTGGGAAATTACCTTCAGAGATGACAGAGCTCATGCATCTGAAAAATGTCTCATTGTTTGAGAACCAATTCTATGGATCAATTCCTCAAAACTTGGGAATCAATTGCAGTTTAGAGAAGCTGGACTTGATGAATAATATGTTTACAGGTGACATCCCTCCAAATCTTTGTTTTGGAAAGAAACTACGTACACTGCACTTAGGTCTTAATCAACTTCAGGGGGGTATACCTCAAGATTTGGGAAGATGTGCATCTCTGGGGAGGTTGGTTCTCAATGATAATAATCTTTCTGGGTCCCTTCCTGAATTTGAAGGTAATCAGAATCTCATATACTTGGACATGAGCAATAACAACATCAGTGGTGTAATTCCATCAAGTTTGGGAAACTGCACAAGTCTCACAGCGCTAATTTTGTCCACGAATAACATTACTGGGCTTATACCCTTAGAGTTTGGAAATCTTGTAAACCTTCAGGCTTTAAATCTTGCTCACAACAATCTAGAAGGTCCTTTACCACAGAAGCTGTCATACTGTACCAGAATGTTGACATTTGATGTGGGATTCAATTTTCTTAATGGTTCATTCCCATCAAGCATGAAGAGCTGGACAGGACTAACAAAATTAATTTTAAGACAGAATCATTTTACTGGGGTCATCCCATCTTTCTTGTCAGAATACGATCAATTACTTGAGCTACAGCTCGGAGGAAATATGTTTGTGGGGAAAATTCCTGCATCAATTGGATCACTGCAAAATCTCTTGTATGAGTTGAATCTGAGTGCTAATAAATTAACTGGTGAGATTCCCTTAGAAATTGGGAAATTGCAAAAGCTGCAAAGCCTGGATATATCCCTGAACAATTTGACAGGGAGCATACATGTTCTTGGTGAACTTTCTTCATTAATAGAAGTCAATGTATCACACAACTCATTCATTGGTCCTTTACCAGAGTGGAAAACTCAGCATCAGAATTTGTCTCCATCGTCATTCTTGGGTAATCCTAATCTCTGTGTTCATTGTTTGACCTCGAATGGCTTCAGTTGCACAAAATATAGCATCTTGAAACCATGTGCCTCTGAGTCATCTGGCCACAAAAGCAGTACACATGCAACTTTATTTATAGTACTGGGATTCGTAGGATTTGTCATTTGCTTGTCAGGAATGCTACTAATTTATGACCGCCATTCTGGCCATATGTCTCAGGAAGCCCTGTACTGTAGTGAAAGATCTGAAGAGGAAGTCCTTACTCATTATAATAAGCAACATTTAATCCGTGAGTTTGGTGAAAGAGCTATGCTAGAGGGAAACTTTTTTTGTCCAGAGCCAGAGGCTTCATATTCAAGTGACAGAGGAGATTTCAGAATTAATGACCTGATAAATGCTGCAGAGAATCTAGACGATCGGTATATCATTGGCGAAGGAGGGCATGGAATTGTTTATAGAGCTGAACTTGATGTTGGAGTTTTTGCTATCAAGAAGGTTAAATTTGGGAAAAGCAATAGGAGGAAATTAAACATGATCAGAGAAGTTGAAATGACTAGGAAGATTAGGCATCAAAATGTGGCAAGGTCCCTAGGCTCCTGGATAGGCCAGGAATATGGTCTAAGCATTAGCAGGTACATGGAAAATGGAAGTCTTCATCATGTTTTGCATGAAAATAACCCACTACCATACTTAGCTTGGAATGTCCGCTATAAAATTGCTGTTGGAATTGCAAAAGGACTGGCATATCTCCACCAAGACTTTGATCCTCCCATATTGCATAGAGACATCAAACCAAAGAATATACTCCTTGACTCTGATATGCGGCCTTATATTACTGATTTTGGTATATCAATTGCTTTGAATCAGTCCTCTACTGTGGTGAATATGCGGTCAACATATCATCTAGGTACACGTGGATTTATGGCTCCAGATATTGTTGAATTCCTTGAAACACCCACAGATCCAGGAATTTTGATTCGACATGACAATGATTCATTTCATTTGGGAAATTCCCTCATGACTGCTTTGGCCTTTATATTTTTTCAGGGGGAAGTCAAGATCCCTGCCAATGAAGGTTCTATCTTAGATCTTCATGAAGTGGAGGCTACTGCAAACCCAAACAATCTCAAGATTATTCCCAGAGGAGCTCCTGGAGTTATTTCTAAAGTTCAAACATATTCAGGCATAATTTGTGCTGAAAAGAAGCTTTCATTTTCTGGGAACTTGGGCAATATCTTAAGTGCTGGAACTGAAGTTGAAATCCTTGGAAAGATTAGGCACCGAAATATAGTTAGAATGCTATGGTGTTCGATCAAAAAAGACTACGGTTTAATCTGGTATGAGCACATGGAAAATGGAAACCTACATGATCTTTTGTATGAAAAGAACCCCCCACCACCGCTAAAGTGGGATGTTCGTTATAAGATAGCCACTGGAATTGCTCACGGCTTGGCCTATTTGCATCATGATTGTGATCCAATGGTCGTGCACTGTGCCATCAAACCAAAAAATATACTTCTAGATTCTGATATGGAGCCTCGTATTGCTGATTTCAGTATTGCCAAACATTGGAAATTTTGTGATGAATATCCTACAATGCCATCCTCATCTATTCTAGGCAGACTACTTAGACTAGGGTATATTACACTAGGTACTTCTTCTACTCTTATAATCTTATCTTTCCCTTCTATTTTCAAATGCTTAGATAAATAA 3861 0.3911 MRLLLFILCLSVPLYVASNLSSDGLTLLSLLNHWTSVPPSVKSRWKSTDSTPCLWIGIQCDHYSNVIFLNLTAYRIFGKLGVEIGQLTHLQNLLLATNGFSGSIPPELGNCSLLEYIDLSDNYFNGRIPHTLKKLEHLRYMTLSSNMLNGEIPDSLFQIPELEGIDLHNNNLSGPLPSNIGNTTKLFKLHLSSNQLSGTIPSSIGNCSKLEALFVNDNIVTGVLPQSLNNLKNLVYLDVKNNSLGGIIPLGSGSCSKLSILDLSFNEFSGGIPSGLGNCSDLLELAAMKSNLVGSIPSSLGLLSKLSILCLPENHLAGFIPPEIGNCKSLKKLHLYSNQLGGTIPHELGGLSELEDLEMYSNRLTGNIPLTIWRIQNLKHVLLHNNSLSGKLPSEMTELMHLKNVSLFENQFYGSIPQNLGINCSLEKLDLMNNMFTGDIPPNLCFGKKLRTLHLGLNQLQGGIPQDLGRCASLGRLVLNDNNLSGSLPEFEGNQNLIYLDMSNNNISGVIPSSLGNCTSLTALILSTNNITGLIPLEFGNLVNLQALNLAHNNLEGPLPQKLSYCTRMLTFDVGFNFLNGSFPSSMKSWTGLTKLILRQNHFTGVIPSFLSEYDQLLELQLGGNMFVGKIPASIGSLQNLLYELNLSANKLTGEIPLEIGKLQKLQSLDISLNNLTGSIHVLGELSSLIEVNVSHNSFIGPLPEWKTQHQNLSPSSFLGNPNLCVHCLTSNGFSCTKYSILKPCASESSGHKSSTHATLFIVLGFVGFVICLSGMLLIYDRHSGHMSQEALYCSERSEEEVLTHYNKQHLIREFGERAMLEGNFFCPEPEASYSSDRGDFRINDLINAAENLDDRYIIGEGGHGIVYRAELDVGVFAIKKVKFGKSNRRKLNMIREVEMTRKIRHQNVARSLGSWIGQEYGLSISRYMENGSLHHVLHENNPLPYLAWNVRYKIAVGIAKGLAYLHQDFDPPILHRDIKPKNILLDSDMRPYITDFGISIALNQSSTVVNMRSTYHLGTRGFMAPDIVEFLETPTDPGILIRHDNDSFHLGNSLMTALAFIFFQGEVKIPANEGSILDLHEVEATANPNNLKIIPRGAPGVISKVQTYSGIICAEKKLSFSGNLGNILSAGTEVEILGKIRHRNIVRMLWCSIKKDYGLIWYEHMENGNLHDLLYEKNPPPPLKWDVRYKIATGIAHGLAYLHHDCDPMVVHCAIKPKNILLDSDMEPRIADFSIAKHWKFCDEYPTMPSSSILGRLLRLGYITLGTSSTLIILSFPSIFKCLDK 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g1004 1286 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 448 734 - -
Mibi04g1004 1286 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 177 - -
Mibi04g1004 1286 Gene3D Transferase(Phosphotransferase) domain 1 1073 1263 - -
Mibi04g1004 1286 Gene3D Transferase(Phosphotransferase) domain 1 843 1039 - -
Mibi04g1004 1286 ProSitePatterns Serine/Threonine protein kinases active-site signature. 974 986 IPR008271 GO:0004672|GO:0006468
Mibi04g1004 1286 Gene3D Ribonuclease Inhibitor 275 396 IPR032675 -
Mibi04g1004 1286 Gene3D Ribonuclease Inhibitor 21 178 IPR032675 -
Mibi04g1004 1286 FunFam Os07g0541700 protein 1166 1251 - -
Mibi04g1004 1286 SMART serkin_6 853 1163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g1004 1286 FunFam Os07g0541700 protein 929 1019 - -
Mibi04g1004 1286 Gene3D Ribonuclease Inhibitor 397 735 IPR032675 -
Mibi04g1004 1286 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 272 - -
Mibi04g1004 1286 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515
Mibi04g1004 1286 SUPERFAMILY Protein kinase-like (PK-like) 839 1032 IPR011009 -
Mibi04g1004 1286 Pfam Protein kinase domain 858 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g1004 1286 Pfam Protein kinase domain 1093 1245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g1004 1286 ProSiteProfiles Protein kinase domain profile. 853 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g1004 1286 SMART LRR_typ_2 328 351 IPR003591 -
Mibi04g1004 1286 SMART LRR_typ_2 87 111 IPR003591 -
Mibi04g1004 1286 SMART LRR_typ_2 183 207 IPR003591 -
Mibi04g1004 1286 SMART LRR_typ_2 542 566 IPR003591 -
Mibi04g1004 1286 SMART LRR_typ_2 231 255 IPR003591 -
Mibi04g1004 1286 SMART LRR_typ_2 663 686 IPR003591 -
Mibi04g1004 1286 SMART LRR_typ_2 303 327 IPR003591 -
Mibi04g1004 1286 SMART LRR_typ_2 135 159 IPR003591 -
Mibi04g1004 1286 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 458 1027 - -
Mibi04g1004 1286 Gene3D Ribonuclease Inhibitor 179 274 IPR032675 -
Mibi04g1004 1286 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 324 420 - -
Mibi04g1004 1286 Pfam Leucine Rich repeat 663 678 IPR001611 GO:0005515
Mibi04g1004 1286 ProSitePatterns Protein kinases ATP-binding region signature. 859 881 IPR017441 GO:0005524
Mibi04g1004 1286 SUPERFAMILY Protein kinase-like (PK-like) 1084 1253 IPR011009 -
Mibi04g1004 1286 SUPERFAMILY RNI-like 224 532 - -
Mibi04g1004 1286 Pfam Leucine rich repeat N-terminal domain 21 61 IPR013210 -
Mibi04g1004 1286 SUPERFAMILY L domain-like 441 741 - -
Mibi04g1004 1286 SUPERFAMILY L domain-like 23 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g1004 Mibi-ChrMibi04 20499090 20504826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g1004 1060 1238 Receptor kinase-like Gene Family AT1G73080 41.989 7.29e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mibi04g1004 Pkinase 8.9e-31 CL0016