Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0985 ATGAAGATCATCAACATGTCCCTTTATTTATTTCTGAATATCCTCATCGATCCCTGTTTCCCAACTTTATCTTATCCTCCTTGTTCACCCCTCAGCAGAAAAATAACTCTTCTTCCATTGAAGTCTTTGTTTAAACCAGAGAAACCCTTGGAAGTTATGTGTGAAATCTGTGCAGAAACTAAACGAATTACCCAGATGCTCAAGAACTACACATGTGACCATTCTTATTGCTCTGATTGCATGACAAAACATGTGGCCACCAAAATCCAAGACACCATAACAGGAGTTCGTTGTCCCGGTTTGGATTGTGAAACTGTTTATGAGCTTGAAGATTGTCGGCCATGGCTTCCCAAGGACTTAATTGAAAGGTGGGATAAGGCTCTATGTGAAGCTCTTTTTCTGCAGGTTCCTAAATTTTACTGTCCATTTAAGGATTGTTCAGTGATGATGTTGGTTGAGAATGAGGGAGATGAGCAATATGCAGGGGAAACAGAGTGCCCTGTTTGCCACAGAAAGTTCTGTCCTAAGTGTAAGGTTCCATGGCATCATGGTGTTAACTGTGAAGAATATCAGAAGCTGAATGAGAATGAAAGACAGAGAGATGATCTTCTTGTTAGAAAGCTTGCTAAAGAGAAGAAATGGGGAAGGTGCCCAAAGTGTAAGTTCTATGTGGAGAAGACCATTGGATGCTTGCATATCACTTGCAGGTGCAAATATCAGTTCTGTTATGTATGTGGAGAAGAATGGTCTTCTGCTCATGGAGGATGCCAAAGGAATTAG 780 0.409 MKIINMSLYLFLNILIDPCFPTLSYPPCSPLSRKITLLPLKSLFKPEKPLEVMCEICAETKRITQMLKNYTCDHSYCSDCMTKHVATKIQDTITGVRCPGLDCETVYELEDCRPWLPKDLIERWDKALCEALFLQVPKFYCPFKDCSVMMLVENEGDEQYAGETECPVCHRKFCPKCKVPWHHGVNCEEYQKLNENERQRDDLLVRKLAKEKKWGRCPKCKFYVEKTIGCLHITCRCKYQFCYVCGEEWSSAHGGCQRN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0985 259 ProSiteProfiles Zinc finger RING-type profile. 54 99 IPR001841 -
Mibi04g0985 259 SMART ibrneu5 122 187 IPR002867 -
Mibi04g0985 259 SMART ibrneu5 197 256 IPR002867 -
Mibi04g0985 259 Gene3D - 184 259 - -
Mibi04g0985 259 Pfam Zinc finger, C3HC4 type (RING finger) 54 99 IPR018957 GO:0046872
Mibi04g0985 259 ProSitePatterns Zinc finger RING-type signature. 72 81 IPR017907 -
Mibi04g0985 259 SUPERFAMILY RING/U-box 125 192 - -
Mibi04g0985 259 SUPERFAMILY RING/U-box 198 257 - -
Mibi04g0985 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 132 IPR013083 -
Mibi04g0985 259 SUPERFAMILY RING/U-box 51 131 - -
Mibi04g0985 259 FunFam RBR-type E3 ubiquitin transferase 49 135 - -
Mibi04g0985 259 FunFam RBR-type E3 ubiquitin transferase 189 259 - -
Mibi04g0985 259 Pfam IBR domain, a half RING-finger domain 137 187 IPR002867 -
Mibi04g0985 259 Pfam IBR domain, a half RING-finger domain 206 256 IPR002867 -
Mibi04g0985 259 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 40 252 IPR031127 GO:0004842|GO:0016567
Mibi04g0985 259 ProSiteProfiles TRIAD supradomain profile. 50 259 IPR044066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0985 Mibi-ChrMibi04 20161425 20163765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0985 72 246 C3H Transcription Factor Family AT2G19610 31.868 9.85e-21 89.0