Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0984 ATGCCTTTTTGGCACAATATTCTCAACGCTCTTTGTTTCCAAAGTTCATCCAACAATCCTCCAGAGAGTAATTCTATGCCAGAAACTAAGAATGTGAACCCCACAATTGAAACAGATGAACCTTTCGAAGGAATTATCTGTGAAATATGTGCAGAAACTAAAGGAACTACCCAGATGATCAAGAACAATACATGTGACCATTCATATTGTTCTTATTGTATGACAAAATATGTCGCCACCAAAATCCAAGACAACATAACAGTAGTTCCATGTCCTGGTTTGGATTGTAAAACTGTTTATGAGATTGAAGCATGTCGGTCATGGATTCCCAAGGACTTACTTGACAGGTGGGATAAGGCTCTATGTGAAGCTCTTTTTCTGCAGGTTCCTAAATTTTACTGTCCATTTAAGGATTGTTCAGTAATGATGGTGGTTGAGAACGAGGAAGATGAACAATATGAAGGAGAAACACAGTGCCCTGCTTGCCGTAGAATGTTCTGTACAAAGTGTAAGGTTCCATGGCATCCTGGAGTTAATTGTAAGGAATATCAGAAACTGAATGAGAATGAGAGACAGAGAGAAGATCTTCTTCTGAGAAAGCTTGTTAAAGACAAGAAATGGGGAAGGTGTCCCAAATGTAAGTTCTATGTGGAGAAGGCAACTGGATGTTCTCATATCACTTGCAGGTTGGTTTTTTGCTATTCCTTTTGTTCATGA 717 0.3891 MPFWHNILNALCFQSSSNNPPESNSMPETKNVNPTIETDEPFEGIICEICAETKGTTQMIKNNTCDHSYCSYCMTKYVATKIQDNITVVPCPGLDCKTVYEIEACRSWIPKDLLDRWDKALCEALFLQVPKFYCPFKDCSVMMVVENEEDEQYEGETQCPACRRMFCTKCKVPWHPGVNCKEYQKLNENERQREDLLLRKLVKDKKWGRCPKCKFYVEKATGCSHITCRLVFCYSFCS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0984 238 ProSitePatterns Zinc finger RING-type signature. 65 74 IPR017907 -
Mibi04g0984 238 Gene3D - 177 237 - -
Mibi04g0984 238 FunFam RBR-type E3 ubiquitin transferase 43 128 - -
Mibi04g0984 238 ProSiteProfiles Zinc finger RING-type profile. 47 92 IPR001841 -
Mibi04g0984 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 125 IPR013083 -
Mibi04g0984 238 ProSiteProfiles TRIAD supradomain profile. 43 238 IPR044066 -
Mibi04g0984 238 SUPERFAMILY RING/U-box 120 185 - -
Mibi04g0984 238 SMART ibrneu5 115 180 IPR002867 -
Mibi04g0984 238 Pfam IBR domain, a half RING-finger domain 131 180 IPR002867 -
Mibi04g0984 238 Pfam Zinc finger, C3HC4 type (RING finger) 47 92 IPR018957 GO:0046872
Mibi04g0984 238 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 24 237 IPR031127 GO:0004842|GO:0016567
Mibi04g0984 238 SUPERFAMILY RING/U-box 45 124 - -
Mibi04g0984 238 SUPERFAMILY RING/U-box 191 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0984 Mibi-ChrMibi04 20105072 20105788 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0984 37 235 C3H Transcription Factor Family AT2G19610 27.143 4.59e-16 74.7