Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0982 ATGGCTCAGTCCTCCGATTCTGATCTTCTCTTTTTTGATGATTTTTTTCTCTCTTCTCTTTTTCACGAAGATGATGAAGCTAATGATGTTGTTGATCAAACCCCATTTTCCGATTATGAATTTGCCCGAAGATTGCAATTTCAAGAAACCCTCTATTCCTCTTTGATCACTTCCAAAAACCCAAAATTTAATGATCCATCTTCGTCGTCTTCTTCTTCTTCTTTACTCCTTTTACCTTCGTCATCATCAGCTTCTGCCCCTTTGAAAATGGCTGCCATTTGCCATTCCCCAGAAACTGATCACGTGAAATGCTCCCGTGAAACGGGTGAATCATGTCTAGTTATCTGCGAAATCTGTGCGGAAACTAAAGAGGACTCCCAGATGTTTAGAAATCAGAGATGTCATCACTCGTTTTGCTCTGATTGTGTCACAAAACATGTGGCGACAAAAATTCAAGATAATATAACGGTTGTTTCTTGCCCTGGTTTGGGCTGTAAGAGTGTTATTGAGCTTGATGCTTGTCGGCCATGGCTTCCTAAGGATTTGCTTGATAGGTGGGATCAAGCTCTGTGTGAAGCTCTTTTTTTGGCAGCCCCAAAATTTTACTGCCCATTTAAGGATTGTTCAGCTATGATGCTGATTGAGAATGAAGGAGATAATCAAGGTATAAGGGAAGCAGAGTGCCCTGATTGCCACAGACTGTTCTGTGCTAGGTGTGACACTCCATGGCATCCTGGAGTTGATTGTGAGGAATTTCAAAGGCTGAATGAGGATGAGAGAGAGAGGAGTGATCTGATTGTGATAGAGCTTGCTAAAGAGGAGCAATGGAATAGGTGTCCCAATTGTAGGTTCGTTGTGGAGAAGACTGAAGGATGCTTGCACATCACTTGCAGGTGCCACTATGAGTTTTGCTATAGGTGTGGAGAACAATGGACTGCTACTCATGGAGGCTGCCTGAGAAATCTGAACATTTAA 975 0.4246 MAQSSDSDLLFFDDFFLSSLFHEDDEANDVVDQTPFSDYEFARRLQFQETLYSSLITSKNPKFNDPSSSSSSSSLLLLPSSSSASAPLKMAAICHSPETDHVKCSRETGESCLVICEICAETKEDSQMFRNQRCHHSFCSDCVTKHVATKIQDNITVVSCPGLGCKSVIELDACRPWLPKDLLDRWDQALCEALFLAAPKFYCPFKDCSAMMLIENEGDNQGIREAECPDCHRLFCARCDTPWHPGVDCEEFQRLNEDERERSDLIVIELAKEEQWNRCPNCRFVVEKTEGCLHITCRCHYEFCYRCGEQWTATHGGCLRNLNI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0982 324 Gene3D - 245 323 - -
Mibi04g0982 324 SUPERFAMILY RING/U-box 113 193 - -
Mibi04g0982 324 FunFam RBR-type E3 ubiquitin transferase 251 322 - -
Mibi04g0982 324 FunFam RBR-type E3 ubiquitin transferase 111 197 - -
Mibi04g0982 324 SUPERFAMILY RING/U-box 260 318 - -
Mibi04g0982 324 Pfam Zinc finger, C3HC4 type (RING finger) 116 161 IPR018957 GO:0046872
Mibi04g0982 324 SUPERFAMILY RING/U-box 189 254 - -
Mibi04g0982 324 SMART ibrneu5 259 318 IPR002867 -
Mibi04g0982 324 SMART ibrneu5 184 249 IPR002867 -
Mibi04g0982 324 ProSiteProfiles Zinc finger RING-type profile. 116 161 IPR001841 -
Mibi04g0982 324 ProSiteProfiles TRIAD supradomain profile. 112 322 IPR044066 -
Mibi04g0982 324 ProSitePatterns Zinc finger RING-type signature. 134 143 IPR017907 -
Mibi04g0982 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 194 IPR013083 -
Mibi04g0982 324 Pfam IBR domain, a half RING-finger domain 200 249 IPR002867 -
Mibi04g0982 324 Pfam IBR domain, a half RING-finger domain 270 317 IPR002867 -
Mibi04g0982 324 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 311 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0982 Mibi-ChrMibi04 20007489 20008719 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0982 116 308 C3H Transcription Factor Family AT2G19610 28.856 2.81e-20 89.0