Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0976 ATGAAGCTCACCGTGAAAACTTTGAAAGGAAGGAATTTCGAAATCCGGGTCCAACCTTCCGACACTGTCATGGCTGTAAAGAAGAACATTGAAGATGTACAAGGAAAAGATAATTATCCATGTGGACAGCAATTGCTGATTCACGATGGCAAGGTTTTGAAAGATGAGACTACGCTAGCGGAGAACAATGTATCTGAAGATGGATTCATTGTTGTAATGCTTAGCAAGAATAAGACCTTTGGTTCAGCTGGGGCATCATCCACTCCGCCTGCTAGTAATACAGCTACAACTGTATCAGCATCAAATTCCACTCCAGTGCCTGATCCACCACTACAAACCCAGGATGCAAACAACAGAACGGCTGCCACCGATGTCACAGTAACAAATGTACCTGCAGATACTTATGGTGATGCTGCTTCAAATTTAGTTGCTGGTACTAATCTTGAACAGACTATTAAACAAATTATGGACATGGGTGGTGGCAGCTGGGACAGAGAGACAGTTAGTCGTGCTCTTCGGGCAGCTTTTAATAACCCAGAGCGTGCTGTAGATTATTTGTATTCTGGAATTCCTGAAGCAACAGAAGTTGCTGAACCAGTTGCTCATTTTCCAATTAGTCAGAATAATGAAACAAGTGAGGCTACTGCCAGAGCTGCTCCTGGAGCACCTAACTCATCCCCCTTAAACATGTTTCCTCAGGAGGCAGTTGGTGCTGATGCTGGACTGGGATCTCTTGACTTCCTTAGAAACAATCCCCAGTTTCAAGCATTGCGGTCAATGGTGCATTCCAATCCACAAATCTTACAGCCTGTGCTTCAGGAGCTGGGAAAGCAGAATCCCAATCTTTTAAGAATGATTCAAGAGAATCATGCTGAGTTTCTCCAGTTAATTAATGAACCTGTTGATGGTTCTGAAGGGGACATGTTTGACCAGCCTGAGCTAGACATGCCTCATTCTATCAATGTGACACCAGCTGAGCAAGAAGCCATTGGAAGGCTTGAGGCCATGGGATTTGATAGAGCCTCAGTTATAGAGGCATTTTTGGCATGTGACCGGGATGAGCAGTTGGCAGCCAATTATTTGTTGGAGAATGCTGGAGATTTTGAGGATTGA 1113 0.4429 MKLTVKTLKGRNFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHDGKVLKDETTLAENNVSEDGFIVVMLSKNKTFGSAGASSTPPASNTATTVSASNSTPVPDPPLQTQDANNRTAATDVTVTNVPADTYGDAASNLVAGTNLEQTIKQIMDMGGGSWDRETVSRALRAAFNNPERAVDYLYSGIPEATEVAEPVAHFPISQNNETSEATARAAPGAPNSSPLNMFPQEAVGADAGLGSLDFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPNLLRMIQENHAEFLQLINEPVDGSEGDMFDQPELDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0976 370 SMART ubq_7 1 75 IPR000626 GO:0005515
Mibi04g0976 370 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Mibi04g0976 370 CDD UBA1_Rad23_plant 142 191 - -
Mibi04g0976 370 FunFam UV excision repair protein RAD23 B 235 301 - -
Mibi04g0976 370 FunFam UV excision repair protein RAD23 homolog 141 191 - -
Mibi04g0976 370 SUPERFAMILY UBA-like 146 196 IPR009060 GO:0005515
Mibi04g0976 370 Pfam XPC-binding domain 245 300 IPR015360 GO:0003684|GO:0006289|GO:0043161
Mibi04g0976 370 Gene3D - 141 191 - -
Mibi04g0976 370 SUPERFAMILY UBA-like 301 368 IPR009060 GO:0005515
Mibi04g0976 370 FunFam UV excision repair protein RAD23 homolog 317 365 - -
Mibi04g0976 370 MobiDBLite consensus disorder prediction 81 119 - -
Mibi04g0976 370 TIGRFAM rad23: UV excision repair protein Rad23 1 369 IPR004806 GO:0006289
Mibi04g0976 370 Gene3D - 317 365 - -
Mibi04g0976 370 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 146 189 IPR015940 -
Mibi04g0976 370 PRINTS DNA repair protein Rad23 signature 320 336 IPR004806 GO:0006289
Mibi04g0976 370 PRINTS DNA repair protein Rad23 signature 352 367 IPR004806 GO:0006289
Mibi04g0976 370 PRINTS DNA repair protein Rad23 signature 271 293 IPR004806 GO:0006289
Mibi04g0976 370 PRINTS DNA repair protein Rad23 signature 337 351 IPR004806 GO:0006289
Mibi04g0976 370 CDD Ubl_Rad23 1 74 - -
Mibi04g0976 370 FunFam UV excision repair protein RAD23 1 80 - -
Mibi04g0976 370 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Mibi04g0976 370 Gene3D - 235 301 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mibi04g0976 370 SMART uba_6 148 188 IPR015940 -
Mibi04g0976 370 SMART uba_6 326 363 IPR015940 -
Mibi04g0976 370 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 324 364 IPR015940 -
Mibi04g0976 370 SUPERFAMILY XPC-binding domain 242 308 IPR036353 GO:0003684|GO:0006289|GO:0043161
Mibi04g0976 370 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Mibi04g0976 370 SMART CBM 243 286 IPR006636 -
Mibi04g0976 370 Gene3D - 1 80 - -
Mibi04g0976 370 Pfam UBA/TS-N domain 326 361 IPR015940 -
Mibi04g0976 370 Pfam UBA/TS-N domain 148 186 IPR015940 -
Mibi04g0976 370 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0976 Mibi-ChrMibi04 19935657 19941027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0976 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.189 2.13e-07 48.5