LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi04g0974	ATGACTGAAGCTTGCAAAAAATCCTCCATTTTAGGACAGTCATATAATTCTCTCTACATCAATCCTCTCACTGAACTCAGGCACACCCGTAGCTGTAGTGAAAATAGCAGCTTAGCTTCCAGATGTAAAAAATGTGATGATTTCATGCACAAGGATGTTTCAACTGATAATAATAAAGAGAATGTGACGCCCAAGAAGAAAGATGTTACTCGGTTTTGTGACAAGGAAAATGCTGTGCCTGCAAATGGGTTATCATCTTCTTCTTCCTCTTTGCCTAAACACTTCTCAAAGTCCAAGTCTTTATCCACAGATAGGATTTTGAAGCGAAACTCGCTTCAGTTCTGTATGCAAATGAACGAGCCTGAAAAAAAGGCTTTTGGGTGCAATATATGGGATTCTGAAAACTTGAGCTCTTTAAAGATTTGGGATTTCTCTGATTCTGAGGCAGACCCAGCTTCTTCCTGGTCAACCTTGCCCAATAAGTCATTGATTTGTAGACGGTTGCCTATAGATATTGGGAGGTGTACATGCATCATTGTAAAGGAAGCGAAGCCAGAAGGGCTATCTGGGGGCACTATGTATTCGCTTTATACTTATGAAGGTCAGGGTCGCCAGAATAGGAAACTAGCTGTTGCTTATCACAAGAGGCGAAATGGGAGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGCCTCTTGTCCAATTCAGATAATAGTTTCCTTGGAACAGTAACGGCTAACCTTCTGGGTTCCAAGTACCAAATTTGGGATCAGCAGGGATATAGTCATAATTCACATGATAAACAGATAAAACCACCTCTTGCTGTTGTGATGTTTGTACCTACAGCAGCAACATGTACAGGAAGCTACAGAAGCATGAGAGCATATGTACCCAAGCATCAATCTATGTCACTGAAGAACGTAACCCAGATACAACATATCAAAGGATTGCCCATAGATTGGGAGGGAAAGTTGGACAGAGTCCATCAACTGTTCTCGAAGGCTCCACTTTACAATAAGACTTCGAAGCAATTTGAACTTGACTTTAAAGATAAAGGAAGAGCAGAGCTTAGAATCCAAAGATCAGTAAAAAATTTTCAGCTTACTTTGGAGGAGAACGGGAAGCAGCCAATTCTTCAACTGGGTAGAATCGGAAAATCAAAATTTGTTATGGATTACAGATATCCTTTGACCGGTTACCAGGCATTCTGCTTAAGTTTAGCTTCCATTGATACCAAGATCTGTTGCTCTGTGTAA	1257	0.4065	MTEACKKSSILGQSYNSLYINPLTELRHTRSCSENSSLASRCKKCDDFMHKDVSTDNNKENVTPKKKDVTRFCDKENAVPANGLSSSSSSLPKHFSKSKSLSTDRILKRNSLQFCMQMNEPEKKAFGCNIWDSENLSSLKIWDFSDSEADPASSWSTLPNKSLICRRLPIDIGRCTCIIVKEAKPEGLSGGTMYSLYTYEGQGRQNRKLAVAYHKRRNGRSQFIVAQNVKGLLSNSDNSFLGTVTANLLGSKYQIWDQQGYSHNSHDKQIKPPLAVVMFVPTAATCTGSYRSMRAYVPKHQSMSLKNVTQIQHIKGLPIDWEGKLDRVHQLFSKAPLYNKTSKQFELDFKDKGRAELRIQRSVKNFQLTLEENGKQPILQLGRIGKSKFVMDYRYPLTGYQAFCLSLASIDTKICCSV	418

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi04g0974	418	PRINTS	Tubby superfamily signature	331	348	IPR000007	-
	Mibi04g0974	418	PRINTS	Tubby superfamily signature	374	393	IPR000007	-
	Mibi04g0974	418	PRINTS	Tubby superfamily signature	240	264	IPR000007	-
	Mibi04g0974	418	PRINTS	Tubby superfamily signature	395	417	IPR000007	-
	Mibi04g0974	418	SUPERFAMILY	Tubby C-terminal domain-like	152	416	IPR025659	-
	Mibi04g0974	418	PANTHER	TUBBY-RELATED	53	415	-	-
	Mibi04g0974	418	Pfam	Tub family	173	412	IPR000007	-
	Mibi04g0974	418	Gene3D	Tubby Protein; Chain A	159	417	IPR025659	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi04g0974	Mibi-ChrMibi04	19886991	19890254	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi04g0974	58	311	TUB Transcription Factor Family	AT1G16070	55.385	3.23e-92	278

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Mibi04g0974		Tub	7.4e-40	CL0395