Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0913 ATGATGGATAGTTGCGAAAAATCCTCCATATCAGGTAATTCATACAATTCTCTCTATGTCAATCCCCTCACTGAGCTCAGGCATAGCCGGAGCTGTAGCTGTGATTATGGCCGTTTAGCTACCAAAGGTGATGACTTTGAAGGTTTCGCTCGCCGGGGTGGCACGAAAATCTTGGCGGATAACAAAGAGAATGTAACTCCTAACATGAAAGAAGTTGAAGTTTCTTCTGGTGATGACAAGGAAAATGCAGTGCCCAAGAAGTTCTTGAATTCTAGGTCTTTGTCCACTGATAGGATCTTGAAGCCTACTTCGCTTCAGTTCTGCATGCAAATGAATGATTCTGAAAAGGCTTTTGGGTCTAAGATATGGGATCGTTTTGATTTGGAGAATTCGAGTTCTATGAATGTTTGGGACTTTTCTGATTCTGAGGCAGCTCCAGCTTCATCCTGGTCAACTCTGCCAAACAAGTCTTTGATCTGTAGACCATTGCCGATTGATATTGGGAGATGTACTTGTGTTATTGTGAAGGAAGCATCGCCAGAAGGACTATCTGGGGGCACATTGTTTTCTCTTTATACCTATGAAGGCAAAGGACGACAGAATAGGAAACTGGCTGTGGCTTACCGTAAGAGGCGAAATGGGAGGTCTCAATTCACCATAGCTCAGAATGTAAAAGGACTTTTGTCCAATTCAGATGATAGTTTTCTTGGAACAGTGATAGCCAACTTCATGGGTTCAAAATACCACATATGGGATCAGAGATATGGTCATGATTGCCGGGGTAAACAGCCAAAACCGCCTCTTGCTGTCGTGGCATTCATACCAACTGTAACAACATGTACAGGAAGTTACAGAAGCATGAGAGCATATCTCCCCAAACATCAATCTATGTCACTGAAGAACACAAATCAGGTACAACATATCAAAGGACTGCCAACAGATTGGGAGGAAAAGCTGGACAAAGTCCATCAACTATTTTCAAGAATGCCAATATACAACAAGAGTTCAAAGCACTTTGAACTTGACTTCAGAGATAAGGGAAGATCAGGACTTCAGATCCAGACATCAGTTAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAAACAATTTTGCAGTTAGGCAGGGTGGAAAAATCAAAGTTTGTTTTGGATTACAGATATCCTTTGACAGGTTACCAAGCATTCTGCATTTGCTTGGCTTCCATTGACACAAAGCTTTGCTGCACAGTATGGGATGGAAAGGGATTCTCAGAGTGTTTTGGACTGAATGCAGTGACTATTGTTATAATTGTTGCGGTTGGATGCTTTCACAAGAGCAGCCGAGGGATTCAAAGATCAGACACGCAGATGGCCCTTTTGAAGAAGCTTTTCCTCCATGTTATACCAGCTGTTGGAGCATGTGCTTCATTGTTGGACATAATTTTTCTATGGAAGAGAGAAATTAACAGGCACTTTGTTGGATATCATAAGTGGTTTTATAGCTGTTCTGAGTTGATGGTTTGGGTAAGCTTCAGTAATCTCATTTCTACAAATATCATTGTCTTCTCAAGGTGTGTCAGCAGTCATTACATGCTCTGCAACTATGTCTTGTGTTACTGGTGGATTCTGAAACCACTATTCTGGACTGTCCATTTGCTTACAAAATTCCCATTGTTGGAGATTCCAATATGTGTGGTGGAAGGCTTTATTCTTCTTCTGAATATCACATTTGGCATATCCATCAATGTCATAAGAATAAAGATTTTGTCTCCCAAAAACAGTTCATTTGAAGACCCACTTCTTTCCAATGATATGGACCTTGAGGAAGGTCGCCATCATGACCTCGGAAAATCTTGGAATTTTTGTGATTTGATGACTTTCAAGTTCATAAATCCTGTAATGAACCGTGGTGTGGTTAAACAACTGGACTTTGAAGATCTGCTGCAACTACCTTCAGATTTGAATCCTTCTTCCTGTCATGCTATACTTTTCACCTGCTGGCAAGCACAACTTAGCAATAGTGGTTCAAACCCATTTTTACTTAGAGCAGTATGCTGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGCGGTTAATGATTGTATCGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCAAATTTCTTCAAGAAGGTTCAGAGGGTTTGGATGGGTATTTTCTTGCTATATCCTTGGGCCTCACATCTGTAATTAAATCCTTCTTAGATACACAATATACCTTACATCTTGGCAAGCTGAAGCTGAAGCTACGATCTAGTATCATGACTCTAATATATCAGAAGTGTCTGTGTGTGAACTTAGCAGAGCGTTCAAAATTTTCTAATGGAGAAATTCAGACATTTATGTCTGTGGATGCTGATCGAACTGTCAACATGTGTAATAGTTTTCATGATGTGTGGAGCTTGCCTTTACAAATTGGAGTGGCGCTATATCTCTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATTACCATTTTGTTGGTACCAGTCAATAAATGGATATCAGAATTGATTGCAAATGCAACTCAGAAAATGATGAAGCAGAAGGATGAAAGGATACGGAGGACAGGGGAACTTTTAACTTATATTCGCACTTTGAAGATGCATGCATGGGAACTTCTTTTTACTGGTTGGCTTATGGAGACAAGAACTTCTGAAGTAAAACACTTAGCTACCCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACGCCAACTCTCTTTTCTCTTTTCACATTCGGACTCTATGCATTGATGGGGCACCAACTTGATGCTGCAATGGTTTTTACTTGTCTGGCTTTGTTCAACACATTGATTTCACCACTGAATTCATTCCCGTGGGTTATTAATGGATTGATTGATGCCTTTGTATCCTCCAGACGGTTGAGTAGGTTTCTATCTTGCCCTGAAAATACATCTAAGGTGAAAGAGATCAATTCATGTTCCTTGCCATTCCATAGTGAGCAGCCTGACTCTTTGCAAGGTTTAGCAGTCTTTGTCCAAGATGCATGTTGTGCTTGGTCAAGCAGTGATGAAGAAGCATTAAATTTGGTGTTGAACTATGCCAGTCTAAGCCTGTCAAAGGGCTCCTTTGTTGTAGTGATTGGAGAGGTTGGTTCAGGTAAATCATCATTGTTATATTCGATTCTGGGAGAAACACGGGTAACTCATGGATCAATTCACTCTGATGGATCAGTGGCATATGTACCACAGGTCCCATGGATTTTATCTGGAACAATACGTGACAACATAGTATTTGGGAAAAGTTATGATTCCAAAAGGTATGCAGAAACTGTTCAAGCATGTGCTCTCGATGTTGATATCTCATTAATGGTTGGAGGCGACATGGCTTACATTGGGGAAAAGGGAGTCAACTTATCAGGTGGACAAAGAACCCGTCTTGCTTTAGCCAGGGCATTGTACCATGGCTCTGATGTGATTATGCTTGATGATGTCCTGAGTACAGTTGATGCACAAGTTGCTCGTTGGATCTTACACAATGCCATTCTAGGTCCTCTTGTGCAGGGAAAAACGCGATTGCTCTGTACCCATAATATACAGGCAATATCCTCTGCTGAGATGGTTGTTATAATGGACAAAGGACACATAAAGTGGGTGGGAAGTCCTAATGACCACCAAGTTTCTTCATATATAACGTTTTCCCCATTGAATGAACTTGATTCAGATATACAGAATCAAGGACAATCTTGCAGCACAAATGCTTCTTCCAAATTAAAAGAGCTCCCAGCTAGAGAAATTAACCATGTTGTTGAGGAAGCAGAGGAGGTCATTGAATCTGAGTTGAGAAAAGAGGGAAAAGTGGAACTTGGAGTGTATAAGAACTACGCTATGTTCACTGGCTGGTTCATTACAGTTGTAATATGCCTGTCTGCTGTTCTTATGCAAGCTTCTCGTAATGGAAACGATTTATGGCTGTCATTTTGGGTTGATACGGCAGAAAGCAGTCAAACAAGATACTCTCTGTCCTTTTATCTCGCTATATTGGGTCTCTTTTGCATCATAAATTCTCTTCTTACTTTGGTGAGGGCGTTCTCTTTTGCATTTGGTGGCTTACAAGCAGCCATTAAAGTGCACAACAGAATGCTTGGTAATCTTATCAATGCACCTGTGCAATTCTTTGATCAGACCCCAGGTGGAAGAATACTCAACAGGTTTTCCTCGGATCTTTATACAATTGATGACTCCCTTCCATTCATTATGAACATTCTCCTAGCTAACTTTGTTGGCCTCTTGGGCATTGCAGTAGTTTTGTCATATGTTCAGGTCTTTTTCTTAATCCTGCTATTGCCATTTTGGTATATCTACAGTAGACTCCAGTTCTTCTACAGGTCAACATCTAGAGAACTACGGCGGCTTGACAGTGTTTCTCGTTCTCCAATTTATACATCTTTCACTGAAACGCTTGACGGATCATCAACTATTAGGGCATTCAAATCTGAGGACTTATTTTTTGCCAAGTTTACTGAACATGTAACATTGTATCAGAAGACTTCTTACACAGAGATAGCAGCCAGTTTATGGCTTTCCTTACGGCTTCAATTATTAGCTGCATTTATCATCTCATTCATTGCACTGATGGCTGTGGTTGGAGATCAAGGCAATCTGCCAATCAACTTTGGCACCCCTGGGCTGGTAGGATTGGCACTCTCATATGCGGCTCCAATAGTGTCCTTGTTGGGAAGCTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGTCCTTGAATATATGGGCATTCCTCAAGAAGAAATTGCTGGAGGCCTATGCATGAACCCAGATTGGCCAAATCAAGGAGTAATTGATTTCCAAAATGTTACCTTAAGATACAAGCCATCTTTGCCGCCTGCACTCTGCAATCTTAGTTTTACAATTGCGGGAGGGACACAGATTGGAATTATTGGAAGAACAGGTGCCGGAAAGTCTAGTGTGTTGAATGCTCTTTTCCGCCTTAACCTGATATGTACAGGCTCTATTTTCATTGATGGTATAAACATTAACAACATTCCTGTCAGAGACCTACGTTCCCGTTTGGCTGTTGTTCCTCAGAGTCCATTCCTGTTTGAAGGATCATTAAGGGATAATCTAGATCCTTTCCAAGTGCATGATGACTTGAAGATTTGGAATGCTCTGGAGAAGTGTCATGTGAAAGAGGAAGTAGAAGCAGCTGGAGGGCTGCATATTCTTGTAAAGGAATCTGGGATGTCATTTTCTGTTGGCCAAAGGCAGCTTCTTTGCCTTGCGCGTGCTCTTCTCAAATCTTCAAAGGTTCTGTGTTTGGATGAGTGTACAGCCAACGTGGACACACAAACTGCTTCACTCCTTCAAAGTACAATATCTAATGAATTCAAGGGCATAACAGTAATAACAATAGCTCACAGGATCTCGACAGTTTTGAATATGGACAGCATTTTAATTCTTGACCATGGGAACCTGGCTGAACAAGGAAACCCACAGGTTCTTCTGAAACATGACTCCTTATTCGCCAGTTTTGCTAAAGCTTCATCAATGTAA 5589 0.4106 MMDSCEKSSISGNSYNSLYVNPLTELRHSRSCSCDYGRLATKGDDFEGFARRGGTKILADNKENVTPNMKEVEVSSGDDKENAVPKKFLNSRSLSTDRILKPTSLQFCMQMNDSEKAFGSKIWDRFDLENSSSMNVWDFSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEASPEGLSGGTLFSLYTYEGKGRQNRKLAVAYRKRRNGRSQFTIAQNVKGLLSNSDDSFLGTVIANFMGSKYHIWDQRYGHDCRGKQPKPPLAVVAFIPTVTTCTGSYRSMRAYLPKHQSMSLKNTNQVQHIKGLPTDWEEKLDKVHQLFSRMPIYNKSSKHFELDFRDKGRSGLQIQTSVKNFQLTLEENGRQTILQLGRVEKSKFVLDYRYPLTGYQAFCICLASIDTKLCCTVWDGKGFSECFGLNAVTIVIIVAVGCFHKSSRGIQRSDTQMALLKKLFLHVIPAVGACASLLDIIFLWKREINRHFVGYHKWFYSCSELMVWVSFSNLISTNIIVFSRCVSSHYMLCNYVLCYWWILKPLFWTVHLLTKFPLLEIPICVVEGFILLLNITFGISINVIRIKILSPKNSSFEDPLLSNDMDLEEGRHHDLGKSWNFCDLMTFKFINPVMNRGVVKQLDFEDLLQLPSDLNPSSCHAILFTCWQAQLSNSGSNPFLLRAVCCAYGWPYLRLGLLKAVNDCIGFAGPLLLNKLIKFLQEGSEGLDGYFLAISLGLTSVIKSFLDTQYTLHLGKLKLKLRSSIMTLIYQKCLCVNLAERSKFSNGEIQTFMSVDADRTVNMCNSFHDVWSLPLQIGVALYLLYTQVKFAFVSGLAITILLVPVNKWISELIANATQKMMKQKDERIRRTGELLTYIRTLKMHAWELLFTGWLMETRTSEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLYALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAFVSSRRLSRFLSCPENTSKVKEINSCSLPFHSEQPDSLQGLAVFVQDACCAWSSSDEEALNLVLNYASLSLSKGSFVVVIGEVGSGKSSLLYSILGETRVTHGSIHSDGSVAYVPQVPWILSGTIRDNIVFGKSYDSKRYAETVQACALDVDISLMVGGDMAYIGEKGVNLSGGQRTRLALARALYHGSDVIMLDDVLSTVDAQVARWILHNAILGPLVQGKTRLLCTHNIQAISSAEMVVIMDKGHIKWVGSPNDHQVSSYITFSPLNELDSDIQNQGQSCSTNASSKLKELPAREINHVVEEAEEVIESELRKEGKVELGVYKNYAMFTGWFITVVICLSAVLMQASRNGNDLWLSFWVDTAESSQTRYSLSFYLAILGLFCIINSLLTLVRAFSFAFGGLQAAIKVHNRMLGNLINAPVQFFDQTPGGRILNRFSSDLYTIDDSLPFIMNILLANFVGLLGIAVVLSYVQVFFLILLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDLFFAKFTEHVTLYQKTSYTEIAASLWLSLRLQLLAAFIISFIALMAVVGDQGNLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLEYMGIPQEEIAGGLCMNPDWPNQGVIDFQNVTLRYKPSLPPALCNLSFTIAGGTQIGIIGRTGAGKSSVLNALFRLNLICTGSIFIDGININNIPVRDLRSRLAVVPQSPFLFEGSLRDNLDPFQVHDDLKIWNALEKCHVKEEVEAAGGLHILVKESGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDTQTASLLQSTISNEFKGITVITIAHRISTVLNMDSILILDHGNLAEQGNPQVLLKHDSLFASFAKASSM 1862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0913 1862 FunFam ABC transporter C family member 13 992 1248 - -
Mibi04g0913 1862 Gene3D ABC transporter type 1, transmembrane domain 1268 1609 IPR036640 GO:0005524|GO:0016020
Mibi04g0913 1862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1011 1238 IPR003439 GO:0005524
Mibi04g0913 1862 FunFam ATP-binding cassette (ABC) transporter, putative 1613 1859 - -
Mibi04g0913 1862 Coils Coil 1263 1283 - -
Mibi04g0913 1862 PRINTS Tubby superfamily signature 235 259 IPR000007 -
Mibi04g0913 1862 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Mibi04g0913 1862 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Mibi04g0913 1862 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Mibi04g0913 1862 ProSitePatterns ABC transporters family signature. 1762 1776 IPR017871 GO:0005524|GO:0016887
Mibi04g0913 1862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1620 1858 IPR027417 -
Mibi04g0913 1862 Gene3D - 1001 1251 IPR027417 -
Mibi04g0913 1862 FunFam ABC transporter C family member 5 1269 1609 - -
Mibi04g0913 1862 Gene3D - 1614 1857 IPR027417 -
Mibi04g0913 1862 CDD ABCC_MRP_domain1 1013 1214 - -
Mibi04g0913 1862 SUPERFAMILY Tubby C-terminal domain-like 147 411 IPR025659 -
Mibi04g0913 1862 SUPERFAMILY ABC transporter transmembrane region 678 975 IPR036640 GO:0005524|GO:0016020
Mibi04g0913 1862 Pfam ABC transporter 1033 1164 IPR003439 GO:0005524
Mibi04g0913 1862 SMART AAA_5 1041 1215 IPR003593 -
Mibi04g0913 1862 SMART AAA_5 1652 1836 IPR003593 -
Mibi04g0913 1862 Pfam ABC transporter 1644 1790 IPR003439 GO:0005524
Mibi04g0913 1862 Pfam ABC transporter transmembrane region 691 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi04g0913 1862 Pfam ABC transporter transmembrane region 1306 1551 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi04g0913 1862 Pfam Tub family 161 406 IPR000007 -
Mibi04g0913 1862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1626 1859 IPR003439 GO:0005524
Mibi04g0913 1862 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 612 1859 - -
Mibi04g0913 1862 SUPERFAMILY ABC transporter transmembrane region 1301 1608 IPR036640 GO:0005524|GO:0016020
Mibi04g0913 1862 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Mibi04g0913 1862 CDD ABC_6TM_MRP7_D2_like 1304 1603 - -
Mibi04g0913 1862 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 692 967 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi04g0913 1862 Gene3D ABC transporter type 1, transmembrane domain 678 984 IPR036640 GO:0005524|GO:0016020
Mibi04g0913 1862 Gene3D Tubby Protein; Chain A 152 411 IPR025659 -
Mibi04g0913 1862 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1305 1591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Mibi04g0913 1862 FunFam ATP-binding cassette subfamily C member 10 667 984 - -
Mibi04g0913 1862 CDD ABC_6TM_MRP7_D1_like 690 975 - -
Mibi04g0913 1862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1224 IPR027417 -
Mibi04g0913 1862 CDD ABCC_MRP_domain2 1624 1843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0913 Mibi-ChrMibi04 18865135 18890296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0913 57 305 TUB Transcription Factor Family AT1G16070 50.534 4.24e-84 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi04g0913 ABC_membrane 5.7e-38 CL0241