LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi04g0908	ATGGGGAGACGGCAACATAGGTATCGCGGAGTACGACAGAGGCATTGGGGTTCCTGGGTCTCCGAGATTCGTCACCCCATCTTGAAGACAAGAATATGGGTGGGGACTTTTGAAACAGAAGAAGATGCAGCAAGAGCCTATGATGAAGCAGCCATACTCATGTGTGGCCCTCAAGCAATCACCAACTTCCCCTTCAACCCTAATCTCTCTTCTCCTTCCACCACCTCCTTTCTCTCTCCTACTCTCACAGCCAAGCTTCTTCAAATGAAGACACGTCATCACAATAAACAACAACACCATCACCATCCACACGCCTCTCTTACCACTACTCATCCTTCCTCCTTCGCCAATGCTGTCCCCGGCCCAAGCCCTGAGACCGGTTTCCGGTCCCCGGAGGAACAACAGTTTCATCAACTGCAAGTGCTTGAGGATGATCACGTTGAGCAAATGATTCAAGAGTTACTTCATTGTGGCTCCATTGAGCTTTCTACTCCTTAA	498	0.496	MGRRQHRYRGVRQRHWGSWVSEIRHPILKTRIWVGTFETEEDAARAYDEAAILMCGPQAITNFPFNPNLSSPSTTSFLSPTLTAKLLQMKTRHHNKQQHHHHPHASLTTTHPSSFANAVPGPSPETGFRSPEEQQFHQLQVLEDDHVEQMIQELLHCGSIELSTP	165

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi04g0908	165	MobiDBLite	consensus disorder prediction	90	106	-	-
	Mibi04g0908	165	SMART	rav1_2	7	70	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0908	165	PRINTS	Ethylene responsive element binding protein signature	30	46	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0908	165	PRINTS	Ethylene responsive element binding protein signature	8	19	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0908	165	CDD	AP2	7	64	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0908	165	ProSiteProfiles	AP2/ERF domain profile.	7	64	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0908	165	MobiDBLite	consensus disorder prediction	90	130	-	-
	Mibi04g0908	165	Pfam	AP2 domain	7	56	IPR001471	GO:0003700\|GO:0006355
	Mibi04g0908	165	FunFam	Ethylene-responsive transcription factor 2	6	66	-	-
	Mibi04g0908	165	Gene3D	AP2/ERF domain	6	65	IPR036955	GO:0003700\|GO:0006355
	Mibi04g0908	165	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	5	106	-	-
	Mibi04g0908	165	SUPERFAMILY	DNA-binding domain	7	65	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi04g0908	Mibi-ChrMibi04	18780123	18781213	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi04g0908	1	164	AP2-EREBP Transcription Factor Family	AT5G25190	50.000	2.30e-52	163

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi04g0908		AP2	2.2e-12	CL0081