Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0859 ATGGCGGGACCCTCGTCGGACGAAATTCTCCGGCCACCAGCTATGGCGGTTTCAGGGGAGCGAAGTGAATCTTCATCTTCCTCCTTCTCTTTATCCAATTTAACTCAGGCTTTTCCTTTCTCTTCTGGAAACCCTAGAATCGAGGAGACCAGAGGCGTCATGCATCTCTTCCGTGACGATCCTTCTTCCTCATCGCCTTCTCATCTCCCCGTTGGACGGAAACCACTTGTCTGTGTGCTTGGAGTGCCAAATCACATGACATATGCAGATTTTTGCCAGTTCTGTGGTTCGTTTATTCAGCATATCTTAGAGATGCGGATTGTCAGAAACGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGTTTTGATGACCAAGATTCTACAGATGGTTTCTACAAGCATTATAATAGGCGTCGTTTCTCATCTATGGAGGTGGAAGTTTGCTGTGTTCTGTTCACTTTGGATGTGCAGTACACTGGCCTGATTGAACATGCACAGGCATCTAATGCTAGCTCAACTGAACAGCCTACATGTCCAGTTTGCTTAGAGCGATTGGATCAAGATACAAGTGGAATTCTTACAACCATTTGCAATCATTCTTTCCATTGCTCCTGCATTTCAAAATGGGCAGATTCATCTTGTCCTGTATGCCGGTATTGTCAGCAGCAGGCTGAAAAATCTATATGTTTTGTTTGTCAAACCACGGAAAACCTCAGCATATGCGTTATTTGTGGGTTTGTTGGCTGTGGAAAATACAAAGCAGGACATGCCAAAATACACTGGAAAGAGACACAGCATTGCTACTTCCAAGAAGTGGAAACACAGCGAGTGTGGGATTATGTGAAAGATAACTATGTTCATAGGCTAATCCTGTCCAAAACTGATGGGAAGTTGGTTGAGTTAAACTCTCACTGTGAGCATACAGGCAATGGATGTGAAAGTTGCAGCTGTGAGGATAATGCTATGAGTGAGGCTATACTTAACAGTAAAGTGGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCTACACAACTTGAAAACCAAAAATTATACTTTGAGTCCTTGCTACAAGAAGTAAAAGAAGAAACTGAAAGAGAAATTTCTAAAGCTGTTGAGAAGGCTGTTGCTGTTAAACTGCAGAAGCTGCAGTCCAAGCTTGACAGATGTTATGAGGAGAAGAAATTTTTGGATGATCTAAACGAGAATTTGCTGAAAAATCAGGAGATCTGGAAAGCCAAGATAGTTGAGATTGAAGAAAGGGAGAAAAAGGACATAATACTCAAGGATGATAAAATAAGGGCCCTGGAAGAGCAGTTAAAAGATCTCATGATTTGTCTTGAAAATGGGAAGTCAGTTGAATAG 1368 0.4196 MAGPSSDEILRPPAMAVSGERSESSSSSFSLSNLTQAFPFSSGNPRIEETRGVMHLFRDDPSSSSPSHLPVGRKPLVCVLGVPNHMTYADFCQFCGSFIQHILEMRIVRNDGMEDQYSVLIRFDDQDSTDGFYKHYNRRRFSSMEVEVCCVLFTLDVQYTGLIEHAQASNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLSICVICGFVGCGKYKAGHAKIHWKETQHCYFQEVETQRVWDYVKDNYVHRLILSKTDGKLVELNSHCEHTGNGCESCSCEDNAMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETEREISKAVEKAVAVKLQKLQSKLDRCYEEKKFLDDLNENLLKNQEIWKAKIVEIEEREKKDIILKDDKIRALEEQLKDLMICLENGKSVE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0859 455 CDD RING-H2_BRAP2 177 220 - -
Mibi04g0859 455 Pfam Ring finger domain 178 219 IPR001841 -
Mibi04g0859 455 Pfam Zn-finger in ubiquitin-hydrolases and other protein 230 289 IPR001607 GO:0008270
Mibi04g0859 455 MobiDBLite consensus disorder prediction 1 30 - -
Mibi04g0859 455 ProSiteProfiles Zinc finger RING-type profile. 179 219 IPR001841 -
Mibi04g0859 455 SUPERFAMILY RING/U-box 213 294 - -
Mibi04g0859 455 ProSiteProfiles Zinc finger UBP-type profile. 213 306 IPR001607 GO:0008270
Mibi04g0859 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 221 IPR013083 -
Mibi04g0859 455 Pfam BRCA1-associated protein 2 69 166 IPR011422 -
Mibi04g0859 455 SMART ring_2 179 218 IPR001841 -
Mibi04g0859 455 SMART Zf_UBP_1 229 278 IPR001607 GO:0008270
Mibi04g0859 455 CDD RRM_BRAP2_like 77 158 - -
Mibi04g0859 455 Coils Coil 344 422 - -
Mibi04g0859 455 PANTHER BRCA1-ASSOCIATED PROTEIN 19 454 - -
Mibi04g0859 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 297 IPR013083 -
Mibi04g0859 455 SUPERFAMILY RING/U-box 178 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0859 Mibi-ChrMibi04 17506957 17511872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0859 175 219 C3H Transcription Factor Family AT1G72220 48.936 2.66e-07 50.8