Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0785 ATGAGTAACGCTTCTTCTCCCGCCTCTCAATTCGACGGAAACGACAAATCCCCTGCTTCATTTCCCTTTGAATACCAATCCTCATCGTTCAAGAATCCCACAAATCCATCCATAATCCCAAATCCTAGGGCACACATACTGAATAATATTAATAACCCTAGGGTTCGATATTTCAAGACCCAACTATGCAGAAAGTTTAGGCTAGGGACTTGTGGACTTGGCTCTAATTGTAGTTTTGCTCATTCTGTTGATGAGCTTAGGAGGCCAGAATCTGGTAATAATAATGATGATAGAGCATTTCAGGATTCTAGGCTTTGTAGAATGTTCTATCAAGGGCAACAGTGTTCTTATGGAAGCACATGTCGTTTCCTTCATGTTAGGCCAAATGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTAATTGTAGGGAAACTACAACTGTAGAGGTTGTTTCTAGTGGGCATGGTAAGAGGAAGTGTGATGAGTTTGAATCAAAGAGTGGGTTTGATGGGATTTTTGATGGTGAAATGAATCCCAAGCTGAAAACACAGTTGTGCATCAAGTGGGAGATGAAAGGGTTTTGCCCCTATGGACATGCTTGTCGCTTTGCTCATGGGCAAGAAGGTGAAATTTTGAGGTTTCTCATTTCATTTCTGTTTAGTTCTCTAGATGTGCCTTGGTTTGATCATTGA 690 0.4203 MSNASSPASQFDGNDKSPASFPFEYQSSSFKNPTNPSIIPNPRAHILNNINNPRVRYFKTQLCRKFRLGTCGLGSNCSFAHSVDELRRPESGNNNDDRAFQDSRLCRMFYQGQQCSYGSTCRFLHVRPNGGGGGGGGGVNCRETTTVEVVSSGHGKRKCDEFESKSGFDGIFDGEMNPKLKTQLCIKWEMKGFCPYGHACRFAHGQEGEILRFLISFLFSSLDVPWFDH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0785 229 Pfam CCCH-type zinc finger 104 125 IPR041367 -
Mibi04g0785 229 PANTHER CCCH ZINC FINGER/TIS11-RELATED 35 128 IPR045877 GO:0003729
Mibi04g0785 229 FunFam Zinc finger CCCH domain-containing protein 175 208 - -
Mibi04g0785 229 MobiDBLite consensus disorder prediction 1 37 - -
Mibi04g0785 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 58 82 IPR000571 GO:0046872
Mibi04g0785 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 181 206 IPR000571 GO:0046872
Mibi04g0785 229 ProSiteProfiles Zinc finger C3H1-type profile. 179 207 IPR000571 GO:0046872
Mibi04g0785 229 SUPERFAMILY CCCH zinc finger 178 207 IPR036855 GO:0046872
Mibi04g0785 229 ProSiteProfiles Zinc finger C3H1-type profile. 57 84 IPR000571 GO:0046872
Mibi04g0785 229 SMART c3hfinal6 179 206 IPR000571 GO:0046872
Mibi04g0785 229 SMART c3hfinal6 57 83 IPR000571 GO:0046872
Mibi04g0785 229 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Mibi04g0785 229 SUPERFAMILY CCCH zinc finger 56 88 IPR036855 GO:0046872
Mibi04g0785 229 ProSiteProfiles Zinc finger C3H1-type profile. 100 128 IPR000571 GO:0046872
Mibi04g0785 229 Gene3D - 101 128 - -
Mibi04g0785 229 Gene3D - 52 88 - -
Mibi04g0785 229 Gene3D - 175 210 - -
Mibi04g0785 229 SUPERFAMILY CCCH zinc finger 100 127 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0785 Mibi-ChrMibi04 16343623 16344312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0785 59 125 C3H Transcription Factor Family AT1G68200 39.706 1.10e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi04g0785 zf-CCCH 3.2e-08 CL0537