Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0670 ATGTCTTCGCCGTCTCCGGTAACATCTCCGTCGTTTAACACCACGGCTTCTCCTCCTGCTCCGCCGCCTTCTGCTGATACTACCAATGACACTTTTGTGTCTCCTACGGCGGCGCCGCCATCTCCTCCTCCGCCGGTCGTTATGCCGACGCCGGTGTCAGAATCAAACGGAATGTCTAAGGCCACAGTGACTGGATTAGTTGTTGGGACCGTATTTGGGTCTCTGCTTATGCTTGTTTGTGTGGGGATTTGTGCTTTTTTCTATAAAAGGAGAAAAAAGAGGAAGATGAGAAAATTTGGGTTGAATGATTTTTCTGATGCTCCTCCTCCTCCTTCTCAACCCAAAGCTGATCAGTTTGGTGGTCCACCCCAGCAATGGCATCATAACATTCCTCCTCCAGCCGATGGTGGAGCAACGATTCCTCCCAAGCCAACTCCACCCCCTGGAGTTATGTTGAATCAGCAGGCATCTTCCCATAACGTCTTATCCCCTCCTATGTATTCTACAAGTGGCACGGGTTTGGAATCCAAGAGACCGTACCATGCACCATCTTCTGCCATTACCTTGGGACTGTTGCAATGCTCGTTTACGTATGAAGAACTTGCGTTTGCAACAAATGGATTCTCAGACTCAAATTTTCTTGGTCAAGGTGGGTTTGGCTATGTACATAAAGGAGTCCTACCAAATGGAAAAACTGTGGCAATTAAGCAGCTGAAATCTGGGAGCAGACAGGGGGAGCGTGAGTTCCAGGCCGAAGTGGAGGTCATTAGCCGAGTCCATCACAGACATCTTGTTTCCTTAGTTGGATACTGCATTGCCGGAGCCCAGAGAATGCTTGTATACGAGTTTGTCCCAAACAATACACTAGAATTCCATTTACATGGAAAAGATGGTTCAACAATGGACTGGGCAGCAAGGATAAAAATTGCTATTGGATCTGCAAAGGGATTGGCATATCTGCATGAAGATTGTCACCCAAAAATCATACATCGTGATATCAAGGCATCTAACATTCTTCTTGATGACAATTTTGAGGCCAAGGTTGCCGATTTTGGACTTGCCAAATTTTCATCAGATGTTGATACCCATGTCTCCACTCGAGTAATGGGAACCTTTGGATACCTGGCTCCAGAATATGCTGCTAGTGGGAAACTCACTGAAAAATCAGATGTCTTCTCCTACGGCGTTGTGCTTTTGGAGTTGATTACAGGGAGAAAACCTGTTGATAAAACCGAGTCTTTTACAGATGACAGTATGGTTGAGTGGGCTAGACCTTTACTTTCTCAAGCTATGGAAGATGGCAACTTCGATGCTCTTGCCGATCCAAGGTTACAGAAGAGTTATGACTCTGATGAGATGCTTCGAATGACTACCTGTGCTGCAAATTGTGTGCGCCATTCATCTAGGCAACGGCCTCGAATGAGTCAGGTAGTTCGGGCTCTTGAAGGCAATATTTCTTTAGATGATCTGAATGAGGGGGGGAGTACACCAGGGCACAGCAGAGCATTTAGTTCCTTTGAAAGTACAGGTTATGATACTGGCCAATACAATGAGGACCTAAAGAAGTTCAGGAAGCTGGCACTAGAGCAAGAAACTAGTGAATACAGTGGGCCCAGTAGCGAATATGGTCAACATCAGTCCGCCTCAAGCAGTTCAGGCCTGCAAAATGCACAAGAGAAATAG 1683 0.4635 MSSPSPVTSPSFNTTASPPAPPPSADTTNDTFVSPTAAPPSPPPPVVMPTPVSESNGMSKATVTGLVVGTVFGSLLMLVCVGICAFFYKRRKKRKMRKFGLNDFSDAPPPPSQPKADQFGGPPQQWHHNIPPPADGGATIPPKPTPPPGVMLNQQASSHNVLSPPMYSTSGTGLESKRPYHAPSSAITLGLLQCSFTYEELAFATNGFSDSNFLGQGGFGYVHKGVLPNGKTVAIKQLKSGSRQGEREFQAEVEVISRVHHRHLVSLVGYCIAGAQRMLVYEFVPNNTLEFHLHGKDGSTMDWAARIKIAIGSAKGLAYLHEDCHPKIIHRDIKASNILLDDNFEAKVADFGLAKFSSDVDTHVSTRVMGTFGYLAPEYAASGKLTEKSDVFSYGVVLLELITGRKPVDKTESFTDDSMVEWARPLLSQAMEDGNFDALADPRLQKSYDSDEMLRMTTCAANCVRHSSRQRPRMSQVVRALEGNISLDDLNEGGSTPGHSRAFSSFESTGYDTGQYNEDLKKFRKLALEQETSEYSGPSSEYGQHQSASSSSGLQNAQEK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0670 560 MobiDBLite consensus disorder prediction 36 50 - -
Mibi04g0670 560 ProSiteProfiles Protein kinase domain profile. 208 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g0670 560 Pfam Protein tyrosine and serine/threonine kinase 213 481 IPR001245 GO:0004672|GO:0006468
Mibi04g0670 560 FunFam Proline-rich receptor-like protein kinase PERK1 284 492 - -
Mibi04g0670 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 328 340 IPR008271 GO:0004672|GO:0006468
Mibi04g0670 560 MobiDBLite consensus disorder prediction 488 510 - -
Mibi04g0670 560 SUPERFAMILY Protein kinase-like (PK-like) 184 481 IPR011009 -
Mibi04g0670 560 MobiDBLite consensus disorder prediction 489 510 - -
Mibi04g0670 560 ProSitePatterns Protein kinases ATP-binding region signature. 214 236 IPR017441 GO:0005524
Mibi04g0670 560 Gene3D Transferase(Phosphotransferase) domain 1 284 492 - -
Mibi04g0670 560 MobiDBLite consensus disorder prediction 532 560 - -
Mibi04g0670 560 SMART serkin_6 208 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi04g0670 560 FunFam proline-rich receptor-like protein kinase PERK1 186 283 - -
Mibi04g0670 560 Gene3D Phosphorylase Kinase; domain 1 172 283 - -
Mibi04g0670 560 MobiDBLite consensus disorder prediction 100 141 - -
Mibi04g0670 560 MobiDBLite consensus disorder prediction 1 57 - -
Mibi04g0670 560 MobiDBLite consensus disorder prediction 529 560 - -
Mibi04g0670 560 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 75 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0670 Mibi-ChrMibi04 13235458 13240367 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0670 17 553 Trihelix Transcription Factor Family AT1G70460 50.000 4.09e-165 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Mibi04g0670 PK_Tyr_Ser-Thr 4.9e-48 CL0016