Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0615 ATGGAAGTACCTGAGTATTTTGTCGGTGCATGTTACTTCGGCTCCGGTGGGGACCACTTCTCACCGGAAAAGCGACATTCCGACCAGAAGCCTACCGGCGGCGAGACCTTCGCCGTCGACGACCTCCTCGATTTCTCCCATGCCGACGCTATCATCTCCTCCGACAATAACGCTTTCCTCGATAATGTCGCCTCCGGTAACTCCACCGATAACTCCTCCACCGGCACCACCACCGCCGTCGATAGCTGCAACTCCTCCAACAACAATAACAACCGTAATTTCTCATCCAACTTCGCTCCTCATCAATTATCCGGCGAACTCTGCGTTCCGTATGATGATATTGCGGAACTGGAATGGCTATCAAATTTCGTGGAAGATTCATTCACCGGACAAGATGAACTGAAAACTCTCCACCTTCTCTCCGGTTCAACCGCCGTCGGATCTTCATCAGCATTTGGCGCCAAACCTCAAACTCCAGAATCTTCTTCCTCCTCCGAAACCCTACCTCCGTTCGACGCAACACGAAACGCACCGTTTCTCCGTACGGAAACTCCCCTACCAGGAAAAGCCCGCAGCAAGCGCTCACGCGCCGCCCCCGGCGATTGGTCCACGCGCTTCCTCCACCTCGTCACGCCGCCGCACGCAGCGGAGGGAAAACCGGCGAAGCCGGTAAAGAGGAGGGAGGGGTTGAGTGATAATAATAATAATAATAATAATAATAATCCGGACTCGACGGGTAGGAGGTGCCTCCACTGCGCGACGGAGAAGACGCCGCAGTGGAGGACAGGGCCTATGGGCCCGAAGACTCTGTGCAATGCGTGTGGGGTGAGATACAAGTCAGGGAGGCTCGTGCCGGAGTATCGGCCCGCTGCGAGCCCGACGTTCATGTCGACGAAGCATTCGAACTCTCACCGGAAGGTTTTGGAGCTGAGGAGGCAGAAGGATATGCAGAGGCAGCAGCATCAACAGTTGATGAGTCAAGCTTCCATTTTTGGTGTATCCAACGGTGGAGATCATCATGAGTTCTTGATTCATCAACACCATGGTGGTGGGCCCGATTATAGGCATATTATGTAG 1077 0.5413 MEVPEYFVGACYFGSGGDHFSPEKRHSDQKPTGGETFAVDDLLDFSHADAIISSDNNAFLDNVASGNSTDNSSTGTTTAVDSCNSSNNNNNRNFSSNFAPHQLSGELCVPYDDIAELEWLSNFVEDSFTGQDELKTLHLLSGSTAVGSSSAFGAKPQTPESSSSSETLPPFDATRNAPFLRTETPLPGKARSKRSRAAPGDWSTRFLHLVTPPHAAEGKPAKPVKRREGLSDNNNNNNNNNPDSTGRRCLHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMSTKHSNSHRKVLELRRQKDMQRQQHQQLMSQASIFGVSNGGDHHEFLIHQHHGGGPDYRHIM 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0615 358 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 307 - -
Mibi04g0615 358 MobiDBLite consensus disorder prediction 230 247 - -
Mibi04g0615 358 ProSiteProfiles GATA-type zinc finger domain profile. 243 279 IPR000679 GO:0006355|GO:0043565
Mibi04g0615 358 ProSitePatterns GATA-type zinc finger domain. 249 274 IPR000679 GO:0006355|GO:0043565
Mibi04g0615 358 MobiDBLite consensus disorder prediction 146 171 - -
Mibi04g0615 358 PANTHER GATA TRANSCRIPTION FACTOR 28 322 - -
Mibi04g0615 358 SMART GATA_3 243 293 IPR000679 GO:0006355|GO:0043565
Mibi04g0615 358 MobiDBLite consensus disorder prediction 146 247 - -
Mibi04g0615 358 CDD ZnF_GATA 248 295 IPR000679 GO:0006355|GO:0043565
Mibi04g0615 358 Pfam GATA zinc finger 249 282 IPR000679 GO:0006355|GO:0043565
Mibi04g0615 358 FunFam GATA transcription factor 238 324 - -
Mibi04g0615 358 Gene3D - 243 293 IPR013088 GO:0006355|GO:0008270
Mibi04g0615 358 PIRSF Txn_fac_GATA_plant 21 335 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mibi04g0615 358 Coils Coil 307 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0615 Mibi-ChrMibi04 11992795 11994260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0615 35 358 C2C2-Gata Transcription Factor Family AT4G32890 44.848 2.99e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi04g0615 GATA 8.2e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi04g0615 04 11992795 11994260 Mibi04g0615 04 11992795 11994260 ECH