Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0558 ATGCAAGACCCAACGACAACAACAACAACAACATTTCATCCTTCCATGGACATGAAACCTCAATTTCCGGAACAAGAACAGCTGAAATGCCCACGTTGTGATTCCAGCAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCTCGCCACTTCTGCAAGAATTGCAGACGCTATTGGACCAAAGGCGGCGCCCTCCGTAACATCCCCGTCGGCGGTGGGACCCGCAAGAACACAAAGCGACCCTCCCCTTCTTCCTCCTCATCGAACACACCAAAAAGATCCTCCCTTTCTTCTTCCCCATCACCTTCTCCTGCATCAGTCTCAGCTCGACCCGACCCGGATCCGAATGGTCATGACCCGACCCGGTTTGGTGGGGCTAACAATGTGACCTTTGGTGGGAGTTTTAGCTCACTTTTGGCTTCAACTGTGCAGTGGGGTGGCTTGTGGGAGGGATTGAATTCCAATGGGTCTGGTTTGAGGATGATGCAGTTGAATAATGGATTTGGGGAGAATAATAATAATAATGTGGTGGGTTCTGGGAATTTGAAGAATTTGGATTCAGGGATGGAGAGGCAGGGTAATGGTAATGGTGGTAATTCTGAGGGCTTTCTGGGTAATAAGCAAAATGTTGATTCTAGCTGTTGGAATCATGGTGGTGGTAGTACTAATGGGTGGTCTGATCTTGCTATTTATACACCTGGCTCAAGTTATCAGTAG 726 0.4807 MQDPTTTTTTTFHPSMDMKPQFPEQEQLKCPRCDSSNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKNTKRPSPSSSSSNTPKRSSLSSSPSPSPASVSARPDPDPNGHDPTRFGGANNVTFGGSFSSLLASTVQWGGLWEGLNSNGSGLRMMQLNNGFGENNNNNVVGSGNLKNLDSGMERQGNGNGGNSEGFLGNKQNVDSSCWNHGGGSTNGWSDLAIYTPGSSYQ 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0558 241 MobiDBLite consensus disorder prediction 69 130 - -
Mibi04g0558 241 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Mibi04g0558 241 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 192 IPR045174 GO:0003700|GO:0006355
Mibi04g0558 241 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Mibi04g0558 241 MobiDBLite consensus disorder prediction 1 23 - -
Mibi04g0558 241 MobiDBLite consensus disorder prediction 1 16 - -
Mibi04g0558 241 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Mibi04g0558 241 MobiDBLite consensus disorder prediction 80 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0558 Mibi-ChrMibi04 10905860 10906585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0558 1 151 C2C2-Dof Transcription Factor Family AT1G51700 59.006 1.78e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mibi04g0558 zf-Dof 4.5e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1341 11 32278862 32279473 Mibi04g0558 04 10905860 10906585 CCT
Mibi04g0558 04 10905860 10906585 Mibi04g0558 04 10905860 10906585 ECH