Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0450 ATGTTGAGTTCAGGAGTGAACCTTGTGTCAGACATATTTGGTAAGAACAAGGGAAAGATCAAAGGAACAATGGTGTTGATGAGCAAGAAGGTTCTTGAGTTCAATAATTTGAACGTCAAAGCAGGTATCAACCTGGGTATTGATGCTGTTACCTCTGTCTTCGATGGTCTTCATCAAGTGATTGGGGGAGCTGTCTCTCTTCAACTGATCAGTTCTACCCAAGCTGATCCTGGGAATGGTTCGGGGAAACTTGGGAAGGCTGCACCATTGGAAGGGTTTATTATGACATTGCCAACGTTGTTGGAAGGGCAAGCTGCATGTAGTGTTCATTTTGATTACGATGATGGATTTGGGGTGCCAGGAGCATTTGTGATCAAGAACACTCTTCAAAATGAGTTCTTTCTTGTGAGTTTGACACTTGATGACATCCCTAATCATGGCTCCATCCACTTTGTTTGCAACTCTTGGATTTATCCTGATTACAGATACAAAAGCCATCGCATATTTTTCGCCAACAAGGCATATCTTCCAAGTCAAACACCAACACCATTACACAAATACAGAGAACAAGAGCTCAACACTTTAAGAGGGGATGGATTCTCAGAGTGCAAAGAGTGGGACAGAGTGTATGATTATGCTACTTATAACGATCTTGGTGATCCTGATTCCAAAAAAACTTTAGCTCGCCCAACTCTTGGAGGTTCTAACAATTATCCTTATCCTCGTAGAGGAAGAACTAGCAGGCCACCTAACAAATCAGATCCAAGCACTGAGAGCGGGCTTGGTTCCCTAGATGCAAGCTTCGATATCTATGTGCCAAGAGATGAGAGATTTGGGCACACAAAGTTATCAGACTTCTTGGGATATTTGATCAAAGCTGTGTCTCAAAACTTGAGGCCTTTATTGGAATCGGCATTTAGATTATCAAATGAGTTCAAAGACTTTGATAATGTGCGTGATCTCTATAATGGTGGATTGCCCCTACCACAAGACTTACTTAACAGTTTCAGTGATAAATTGCCTGTTCCTTTGCTCTCTGAACTTTTTCGAACTGATGGAGAACGGACTCTTAGATATCCAACTCCCTCAATCATCAAAGACAATGTTTCTGGATGGATGACGGATGACGAATTTGCGAGAGAGACACTTGTTGGTGTGAATCCTTGCTTAATTCAGGCTCTCCTAGAGTTTCCCCCAAAAAGCAAGCTAGATGCTACTCTCTACGGTGACCAAACCAGCAAAATAACCAAGGAACAATTGGAGAAAAACATGAATGGCCTCACAGTGGATGAAGCTCTCTCTAGCAAGAGATTGTTCTTATTAGACCACCATGACTCATTCATGCCATACTTGAGACGGATAAATAGTGAAACTGGAAATAAGGCTTACGCCACAAGAACTATCTTTTTCTTGAAAGATGATGGAACTTTGAAGCCATTAGCCATTGAATTAAGCTTACCTCATCCTGATGGAGACCAACATGGTGCTATTAGTAAGGTGATCCTACCAGCAAACCAAGGTGTTGAAGGTACCATTTGGCTCTTGGCTAAAGCTTATGTCACTGTAAATGACTCAGGCATCCATCAACTTATTAGCCACTGGCTGAATACACATGCAGTTATTGAGCCATTTGTCATAGCAACGAACAGGCAATTGAGTGTGCTTCATCCTATTCACAAACTTCTGCTTCCTCATTTTCGTGACACTATGAATATCAATGCATTGGCTCGACAATCATTGATCAATGCTAATGGCATTATAGAGTTATCATTCTTGCCAGGAAAATACTCTATAGAGATGTCTTCTAAAGTTTACCAAAACTGGGTTTTCCCTGATCAAGCCCTACCTGCTGACCTCATTAAAAGGTAA 1869 0.4147 MLSSGVNLVSDIFGKNKGKIKGTMVLMSKKVLEFNNLNVKAGINLGIDAVTSVFDGLHQVIGGAVSLQLISSTQADPGNGSGKLGKAAPLEGFIMTLPTLLEGQAACSVHFDYDDGFGVPGAFVIKNTLQNEFFLVSLTLDDIPNHGSIHFVCNSWIYPDYRYKSHRIFFANKAYLPSQTPTPLHKYREQELNTLRGDGFSECKEWDRVYDYATYNDLGDPDSKKTLARPTLGGSNNYPYPRRGRTSRPPNKSDPSTESGLGSLDASFDIYVPRDERFGHTKLSDFLGYLIKAVSQNLRPLLESAFRLSNEFKDFDNVRDLYNGGLPLPQDLLNSFSDKLPVPLLSELFRTDGERTLRYPTPSIIKDNVSGWMTDDEFARETLVGVNPCLIQALLEFPPKSKLDATLYGDQTSKITKEQLEKNMNGLTVDEALSSKRLFLLDHHDSFMPYLRRINSETGNKAYATRTIFFLKDDGTLKPLAIELSLPHPDGDQHGAISKVILPANQGVEGTIWLLAKAYVTVNDSGIHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLLPHFRDTMNINALARQSLINANGIIELSFLPGKYSIEMSSKVYQNWVFPDQALPADLIKR 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0450 622 Pfam Lipoxygenase 184 622 IPR013819 GO:0016702|GO:0046872
Mibi04g0450 622 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Mibi04g0450 622 PRINTS Plant lipoxygenase signature 396 415 IPR001246 GO:0016491
Mibi04g0450 622 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Mibi04g0450 622 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Mibi04g0450 622 PRINTS Plant lipoxygenase signature 357 373 IPR001246 GO:0016491
Mibi04g0450 622 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Mibi04g0450 622 PRINTS Plant lipoxygenase signature 309 330 IPR001246 GO:0016491
Mibi04g0450 622 PRINTS Plant lipoxygenase signature 463 487 IPR001246 GO:0016491
Mibi04g0450 622 Gene3D - 371 501 - -
Mibi04g0450 622 Pfam PLAT/LH2 domain 72 170 IPR001024 GO:0005515
Mibi04g0450 622 SUPERFAMILY Lipoxigenase 176 622 IPR036226 -
Mibi04g0450 622 ProSitePatterns Lipoxygenases iron-binding region signature 2. 555 565 IPR020834 GO:0016702|GO:0046872
Mibi04g0450 622 Gene3D PLAT/LH2 domain 10 175 - -
Mibi04g0450 622 MobiDBLite consensus disorder prediction 221 261 - -
Mibi04g0450 622 ProSiteProfiles PLAT domain profile. 47 171 IPR001024 GO:0005515
Mibi04g0450 622 PANTHER LIPOXYGENASE 18 622 IPR000907 GO:0016702|GO:0034440|GO:0046872
Mibi04g0450 622 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 19 175 IPR036392 GO:0005515
Mibi04g0450 622 FunFam Lipoxygenase 371 505 - -
Mibi04g0450 622 CDD PLAT_LH2 19 172 IPR042057 -
Mibi04g0450 622 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 622 IPR013819 GO:0016702|GO:0046872
Mibi04g0450 622 SMART LH2_4 18 172 IPR001024 GO:0005515
Mibi04g0450 622 Gene3D - 502 622 - -
Mibi04g0450 622 Gene3D - 176 281 - -
Mibi04g0450 622 Gene3D - 282 370 IPR027433 -
Mibi04g0450 622 PRINTS Lipoxygenase signature 510 527 IPR013819 GO:0016702|GO:0046872
Mibi04g0450 622 PRINTS Lipoxygenase signature 528 545 IPR013819 GO:0016702|GO:0046872
Mibi04g0450 622 PRINTS Lipoxygenase signature 548 568 IPR013819 GO:0016702|GO:0046872
Mibi04g0450 622 ProSitePatterns Lipoxygenases iron-binding region signature 1. 528 542 IPR020833 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0450 Mibi-ChrMibi04 8502319 8506188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0450 19 622 Acyl Lipid Metabolism Gene Families AT1G55020 58.224 0.0 721