Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi04g0421 ATGTGCAAAAACTTTCTTCTGATTATTTCGTTGTTTGGTTATGCTGTTGCAGAGGTTGAAGAATTTTACAGGAAATGTGACCCTGAGAAGGACAATTTGTGCTTGTATGGACTTCCTGGTGAGAAGTGGGATGTGGCCCTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTTTTGGGAATTAACTTTTCCAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTTTAGTTGCGGTCCATAGTGATGTTTGGTTACTTTCTGTGGCCTTCTTTTATGGAGCAAGATTTGGGTTTGATAGACCCGACAGGAAACGACTTTTCAATTCTATCAATGAACTGCCTACAATTTTTGAAGTTGTCTCTGGTATAGCAAAGAAAGAAACGAAGGAGAAGTCTTCAACTCGAAGTGGCAGCAAATCTAAGTCTGGTTCTAAGATGAGAGCTCCAGAAAGTCAGGGTAGACAATCGAAGTCGCTGCCGCCAAAAGATGAGAATGAAATTCTAGACAACCAAGAGGAAGATGATGAACATGGGGATGCATTGTGTGGGGCATGCGGCGAGAATAACGGTACCGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCACGGAAAATGTGTGAAGATTACCCCTGCAAGGGCAGAGCATATCAAGCAGTACAAATGCCCATCATGCAGTATCAACAAGAGAGCTCGGTGCTGA 717 0.4407 MCKNFLLIISLFGYAVAEVEEFYRKCDPEKDNLCLYGLPGEKWDVALPAEEVPPELPEPVLGINFSRDGMQEKDWLSLVAVHSDVWLLSVAFFYGARFGFDRPDRKRLFNSINELPTIFEVVSGIAKKETKEKSSTRSGSKSKSGSKMRAPESQGRQSKSLPPKDENEILDNQEEDDEHGDALCGACGENNGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSINKRARC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi04g0421 238 FunFam PHD finger alfin-like protein 176 232 - -
Mibi04g0421 238 MobiDBLite consensus disorder prediction 139 158 - -
Mibi04g0421 238 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Mibi04g0421 238 Pfam PHD-finger 184 231 IPR019787 -
Mibi04g0421 238 PANTHER CPG BINDING PROTEIN 17 237 IPR045104 GO:0006355|GO:0042393
Mibi04g0421 238 SMART PHD_3 183 231 IPR001965 -
Mibi04g0421 238 Pfam Alfin 17 123 IPR021998 GO:0006355|GO:0042393
Mibi04g0421 238 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Mibi04g0421 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 231 IPR013083 -
Mibi04g0421 238 MobiDBLite consensus disorder prediction 130 167 - -
Mibi04g0421 238 CDD PHD_AL_plant 183 231 IPR044104 -
Mibi04g0421 238 SUPERFAMILY FYVE/PHD zinc finger 173 233 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi04g0421 Mibi-ChrMibi04 7352131 7354571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi04g0421 16 237 Alfin-like Transcription Factor Family AT3G42790 66.667 3.59e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mibi04g0421 Alfin 4.7e-53 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi11g1450 11 34099780 34104327 Mibi04g0421 04 7352131 7354571 CCT
Mibi04g0421 04 7352131 7354571 Mibi11g1450 11 34099780 34104327 ECH
Mibi04g0421 04 7352131 7354571 Mibi04g0421 04 7352131 7354571 ECH